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Table 3 Gene islands differentially present or absent across pathotypes

From: Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

Island A Aw A* Note IAPAR 306 gene X2003-3218 (Aw) gene LD71a (A*) gene Gene name Recombination
Island1 + - + Absent in Aw XAC0211   XAC71A_110067 gloA Event 3
- + - Unique to Aw   XAC3218_110003   avrGf1 Event 3
- + - Unique to Aw   XAC3218_110004    Event 3
Island2 + + - Absent in A* XAC1101 XAC3218_260032    Event 4
- - + Unique to A*    XAC71A_230028   Event 4
- - + Unique to A*    XAC71A_230029 ccdB Event 4
- - + Unique to A*    XAC71A_230030   Event 4
- - + Unique to A*    XAC71A_240006   Event 4
- - + Unique to A*    XAC71A_240007   Event 4
- - + Unique to A*    XAC71A_240008   Event 4
- - + Unique to A*    XAC71A_240009   Event 4
Island3 + + - Absent in A* XAC1492 XAC3218_380022    
+/− + - Absent in A*   XAC3218_390001    
+ + - Absent in A* XAC1493 XAC3218_390002    
+ + - Absent in A* XAC1494 XAC3218_390003   orf2  
+/− + - Absent in A*   XAC3218_390004    
+/− + - Absent in A*   XAC3218_390005    
+ + - Absent in A* XAC1495 XAC3218_390006   xrvA  
+/− + - Absent in A*   XAC3218_390007    
+ + - Absent in A* XAC1496 XAC3218_390008    
+ + - Absent in A* XAC1497 XAC3218_390009    Event 5
+/− + - Absent in A*   XAC3218_390010    Event 5
+/− + - Absent in A*   XAC3218_390011    Event 5
+ + - Absent in A* XAC1499 XAC3218_390012    Event 5
+ + - Absent in A* XAC1500 XAC3218_390014    Event 5
+/− + - Absent in A*   XAC3218_390015    Event 5
+/− + - Absent in A*   XAC3218_390016    Event 5
+/− + - Absent in A*   XAC3218_390017    Event 5
+/− + - Absent in A*   XAC3218_390018    Event 5
+ + - Absent in A* XAC1501 XAC3218_400002    Event 5
+ + - Absent in A* XAC1502 XAC3218_400003    Event 5
+ + - Absent in A* XAC1503 XAC3218_400004    Event 5
+ + - Absent in A* XAC1506 XAC3218_400005    Event 5
+/− + - Absent in A*   XAC3218_400006    Event 5
+/− + - Absent in A*   XAC3218_400007    Event 5
+ + - Absent in A* XAC1507 XAC3218_400008   mobL Event 5
+ +/− - Absent in A* XAC1508 XAC3218_400010    Event 5
+ +/− - Absent in A* XAC1509 XAC3218_400011    Event 5
Island4 + - + Absent in Aw XAC4205   XAC71A_950084   Event 18
+ - +/− Absent in Aw XAC4206     Event 18
+ - + Absent in Aw XAC4209   XAC71A_960001 cvaB Event 18
- ψ - Unique to Aw   XAC3218_960285    Event 18
- ψ - Unique to Aw   XAC3218_960286    Event 18
- + - Unique to Aw   XAC3218_970001    Event 18
- ψ - Unique to Aw   XAC3218_970002    Event 18
- ψ - Unique to Aw   XAC3218_970003    Event 18
  1. + present in all strains of a pathotype; − absent in all strains of a pathotype; +/− present in some strains of a pathotype; ψ putative pseudogene