MycoBASE: expanding the functional annotation coverage of mycobacterial genomes

BMC Genomics

Table 1 Mycobacterial database species

Species	Strain	Abbreviation	Source	Genes	Reference
M. abscessus sub. abscessus	ATCC 19977	MAB	TBDB	4942	[40]
M. tuberculosis	H37Rv	MTB	NCBI	4018	[16]
M. bovis	AF2122/97	MBOVIS	TBDB	3920	[41]
M. avium	104	MAV	TBDB	5120	[42]
M. abscessus sub. massiliense ^a	CRM0020	CRM	NCBI	4750	[43]
M. abscessus sub. massiliense ^a	CCUG48898	MMAS	NCBI	5193	[44]
M. abscessus sub. bolletii	CIP108541	MBOL	NCBI	4923	[45]
M. leprae	TN1	MLEPRAE	TBDB	1605	[21]
M. intracellulare	ATCC 13950	MINT	NCBI	5144	[46]
M. kansasii	ATCC 12478	MKAN	NCBI	5449	unpublished
M. smegmatis	MC2 155	MSMEG	TBTB	6716	unpublished

Species in the initial release of the database that contain both functional and GO term annotation data. ^a Subspecies massiliense is currently listed as subspecies bolletii in NCBI; however, the classification is still being debated and the distinction between massiliense and bolletii has clinical importance [47]

ISSN: 1471-2164