SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs

BMC Genomics

Table 2 Positions of poly-C tracts in the BFR-CA-9557 genome

Poly C on forward strand			pos. rel. to		ORF location
Position	Length	RAST annotation of closest ORF	ATG	STOP	Start	Stop	Strand
442261	11	Putative lipoprotein of ferric iron transporter system	139	−3	442254	442132	-
1099189	10	hypothetical protein	739	−7	1099187	1098459	-
1257487	9	Phosphoglycerol transferase	1728	−256	1257735	1255767	-
1427910	9	Filamentous haemagglutinin domain protein	1554	−9	1427911	1426364	-
1547848	9	FIG 00469527: hypothetical protein	637	−596	1548436	1547219	-
1587049	8	hypothetical protein	679	−575	1587617	1586377	-
1607917	9	FIG 00470049: hypothetical protein	2305	34	1607875	1605620	-
1660758	9	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase (EC 2.4.99.-)	64	−620	1661370	1660702	-
1668862	8	CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase (EC 2.4.99.-)	40	−1587	1670442	1668829	-

Poly-G/C tracts were searched in the BFR-CA-9557 genome using regular expression describing at least 8 consecutive G/C. The first two columns denote the genome location and length of the expression found. Column 3 shows the RAST annotation of the ORF closest to the homopolymeric stretch. Column 4 and 5 represent the relative position of the stretch to the ORF’s start (4) and Stop codon (5), with negative numbers representing upstream locations. Columns 6 to 8 denote the location and orientation of the ORF

ISSN: 1471-2164