BMC Genomics

Table 1 Gene expression analyses between Nipponbare and 93-11

From: Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes

Tissue	Nipponbare		93-11		Nipponbare or 93-11
Tissue	Expressed^a	jiDE^b	Expressed^a	jiDE^b	Expressed^a	jiDE^b	j > i
Panicle	13,293	479	13,177	181	14,197	556	450
Shoot	13,768	896	13,477	599	14,897	1035	679
Panicle or Shoot	15,074	1141	14,739	744	16,166	1286	957
Common	11,987	721	11,915	467	12,928	831	457

^aA gene expression value was defined as the average of replicate median of non-SFP probes log₂-intensities in a set. We defined highly expressed genes as those having an expression value higher than seven
^bDetected number of jiDE genes among the highly expressed genes by SNEP analysis

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ISSN: 1471-2164

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