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Table 3 Changed-tissues DE genes among the three strains

From: Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes

 

Endosperm

Anther

Panicle

Root

Leaf

Highly expressed genesa

13,533

13,571

14,183

14,024

13,993

Nipponbare-Minghui63 DE genes

730

852

626

989

1134

Nipponbare-Zhenshan97 DE genes

645

516

627

836

1148

Minghui63-Zhenshan97 DE genes

109

651

203

110

464

Common jiDE genesb

446

191

312

651

670

Observed three-way DE genesc

7

10

23

10

33

Expected three-way DE genesd

3.6

9.2

4.5

5.1

22.2

p valuee

0.0956

0.733

3.67E-10

0.0382

0.0276

  1. aNumber of highly expressed genes in any of the three strains excluding silent genes
  2. bNumber of commonly detected changed-tissues DE genes in the both NM and NZ combinations
  3. cNumber of observed three-way DE genes, whose expression level was different in each of the three strains
  4. dNumbers of expected three-way DE genes were based on the hypothesis that proportion of three-way DE genes among Common jiDE genes would be the same as that of Minghui63-Zhenshan97 DE genes among the highly expressed genes
  5. e p values of the hypothesis were evaluated by Fisher’s exact test