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Fig. 6 | BMC Genomics

Fig. 6

From: Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits

Fig. 6

IGV outputs of the alignments of the RNA-Seq reads for each cv at the LOC_Os06g12450 and LOC_Os11g14220 loci on Nipponbare Reference Genome (left part). Only one biological replicate for each genotype is represented. The structures of the genes annotated in the Rice Genome browser MSU database are reported in the lower bar. Thick and intermediate boxes represent exons and 5’ and 3’-UTR regions, respectively. Lines between boxes indicate introns. The mapping coverage for each variety at the level of each exon and intron is represented by the upper grey parts. Forwards reads are in red, reverse reads are in blue. Enlargement of the sections indicated by black squares are represented on the right part of the Figure. Putative functional SNPs are indicated as coloured bars: orange for G to A and red for G to T and C to T

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