From: Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits
 | ARB/BAL | ARB/CAR | ARB/GV | ARB/VN | ARB/VOL | BAL/CAR | BAL/GV | BAL/VN | BAL/VOL | CAR/GV | CAR/VN | CAR/VOL | GV/VN | GV/VOL | VN/VOL | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LOCUS | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq | qRT-PCR | RNA-Seq |
LOC_Os06g04200 GBSSI | 0.97 | 0.67 | 3.68 | 2.48 | 3.41 | 2.46 | 3.04 | 2.31 | 0.64 | 0.53 | 2.71 | 1.82 | 2.44 | 1.79 | 2.07 | 1.65 | −0.33 | ND | −0.27 | ND | −0.64 | ND | −3.04 | −1.96 | −0.38 | ND | −2.77 | −1.94 | −2.40 | −1.79 |
LOC_Os06g30310 GWD | −0.04 | ND | −0.55 | −0.92 | 0.80 | ND | −0.48 | ND | 0.79 | 0.64 | −0.51 | −0.64 | 0.84 | 0.62 | −0.44 | ND | 0.82 | 0.92 | 1.35 | 1.27 | 0.07 | 0.56 | 1.33 | 1.56 | −1.28 | −0.71 | −0.01 | ND | 1.27 | 1.00 |
LOC_Os05g50380 AGPaseL | 1.03 | 0.72 | 0.25 | ND | 0.83 | 0.47 | 0.31 | ND | 1.83 | 1.15 | 0.17 | ND | 0.21 | ND | −1.66 | −0.78 | 0.75 | 0.44 | 0.12 | ND | −0.88 | −0.58 | 1.12 | 0.63 | −0.32 | −0.53 | 1.13 | 0.69 | 1.75 | 1.22 |
LOC_Os08g25734 AGPaseS | 1.42 | 1.46 | 0.80 | 0.66 | 0.77 | 0.58 | −0.35 | ND | 0.52 | 0.79 | −0.62 | −0.80 | −0.64 | −0.87 | −1.77 | −1.59 | −0.90 | −0.66 | −0.02 | ND | −1.15 | −0.79 | −0.28 | ND | −1.13 | −0.71 | −0.26 | ND | 0.87 | 0.92 |
LOC_Os07g11910 PROLM20 | 0.53 | ND | −1.58 | −8.57 | 0.15 | ND | −1.34 | −9.94 | 0.36 | ND | −2.11 | −8.37 | −0.39 | ND | −1.88 | −9.75 | −0.18 | ND | 1.72 | 9.08 | 0.23 | ND | 1.93 | 8.96 | −1.49 | −10.45 | 0.21 | ND | 1.70 | 10.33 |
LOC_Os07g10570 PROLM25 | 0.04 | ND | −0.09 | ND | 0.62 | ND | −0.07 | ND | 2.74 | 1.04 | −0.13 | ND | 0.59 | ND | −0.10 | ND | 2.71 | 1.26 | 0.71 | ND | 0.02 | ND | 2.83 | 1.25 | −0.69 | ND | 2.12 | 1.59 | 2.81 | 2.07 |
LOC_Os12g17010 PROLM29 | −3.22 | −2.84 | −1.22 | −1.39 | 2.37 | 9.23 | −2.99 | −3.25 | −2.57 | −2.62 | 2.00 | 1.46 | 5.59 | 12.07 | 0.23 | ND | 0.65 | ND | 3.59 | 10.62 | −1.77 | −1.86 | −1.35 | −1.24 | −5.36 | −12.48 | −4.94 | −11.85 | 0.42 | ND |
LOC_Os12g16880 PROLM27 | −2.54 | −2.39 | −0.32 | ND | 2.08 | 5.95 | −2.35 | −1.98 | 0.06 | ND | 2.22 | 1.62 | 4.62 | 8.34 | 0.19 | ND | 2.60 | 2.09 | 2.40 | 6.72 | −2.03 | −1.21 | 0.38 | ND | −4.43 | −7.93 | −2.02 | −6.24 | 2.41 | 1.68 |
LOC_Os02g16830 Glu | −1.03 | −0.55 | 0.00 | ND | 1.81 | 2.39 | −0.51 | ND | −0.11 | 0.48 | 1.03 | 0.94 | 2.84 | 2.94 | 0.52 | 0.41 | 0.92 | 1.03 | 1.81 | 1.99 | −0.51 | −0.53 | −0.11 | ND | −2.32 | −2.52 | −1.92 | −1.90 | 0.40 | 0.62 |
LOC_Os02g14600 Glu | −0.54 | −0.67 | 1.22 | 1.05 | 0.88 | 0.43 | 0.62 | ND | 0.35 | ND | 1.76 | 1.72 | 1.42 | 1.10 | 1.17 | 0.83 | 0.90 | 0.55 | −0.34 | −0.62 | −0.59 | −0.89 | −0.86 | −1.18 | −0.25 | ND | −0.52 | −0.56 | −0.27 | ND |
LOC_Os02g14720 GW2 | 0.05 | ND | 0.65 | 0.70 | 0.82 | 0.75 | 0.28 | ND | 0.29 | ND | 0.59 | 0.85 | 0.77 | 0.90 | 0.23 | ND | 0.24 | ND | 0.17 | ND | −0.36 | −0.63 | −0.36 | −0.43 | −0.54 | −0.69 | −0.53 | −0.49 | 0.01 | ND |
LOC_Os04g33740 GIF1 | −0.12 | ND | 0.34 | ND | 1.39 | 1.14 | −0.95 | −0.66 | −0.13 | ND | 0.46 | 0.56 | 1.50 | 1.41 | −0.83 | ND | −0.02 | ND | 1.05 | 0.85 | −1.29 | −0.95 | −0.47 | ND | −2.34 | −1.81 | −1.52 | −1.09 | 0.82 | 0.72 |
LOC_Os07g39480 WRKY78 | −0.26 | ND | −0.06 | ND | −0.08 | ND | −0.60 | −0.46 | −1.95 | −0.98 | 0.21 | ND | 0.19 | ND | −0.34 | ND | −1.69 | −0.93 | −0.02 | ND | −0.55 | −0.65 | −1.90 | −1.17 | −0.53 | ND | −1.88 | −0.74 | −1.35 | −0.52 |
LOC_Os07g08420 RISBZ1 | 0.31 | ND | 0.56 | 0.68 | 0.36 | 0.46 | −0.06 | ND | 1.10 | 1.06 | 0.25 | 0.57 | 0.05 | ND | −0.37 | ND | 0.79 | 0.94 | −0.20 | ND | −0.62 | −0.80 | 0.54 | ND | −0.42 | −0.58 | 0.74 | 0.60 | 1.16 | 1.18 |