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Table 3 Comparison of qRT-PCR FCs in the pair-wise comparisons at 14 DAF and RNA-Seq FCs

From: Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits

 

ARB/BAL

ARB/CAR

ARB/GV

ARB/VN

ARB/VOL

BAL/CAR

BAL/GV

BAL/VN

BAL/VOL

CAR/GV

CAR/VN

CAR/VOL

GV/VN

GV/VOL

VN/VOL

LOCUS

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

qRT-PCR

RNA-Seq

LOC_Os06g04200

GBSSI

0.97

0.67

3.68

2.48

3.41

2.46

3.04

2.31

0.64

0.53

2.71

1.82

2.44

1.79

2.07

1.65

−0.33

ND

−0.27

ND

−0.64

ND

−3.04

−1.96

−0.38

ND

−2.77

−1.94

−2.40

−1.79

LOC_Os06g30310

GWD

−0.04

ND

−0.55

−0.92

0.80

ND

−0.48

ND

0.79

0.64

−0.51

−0.64

0.84

0.62

−0.44

ND

0.82

0.92

1.35

1.27

0.07

0.56

1.33

1.56

−1.28

−0.71

−0.01

ND

1.27

1.00

LOC_Os05g50380

AGPaseL

1.03

0.72

0.25

ND

0.83

0.47

0.31

ND

1.83

1.15

0.17

ND

0.21

ND

−1.66

−0.78

0.75

0.44

0.12

ND

−0.88

−0.58

1.12

0.63

−0.32

−0.53

1.13

0.69

1.75

1.22

LOC_Os08g25734

AGPaseS

1.42

1.46

0.80

0.66

0.77

0.58

−0.35

ND

0.52

0.79

−0.62

−0.80

−0.64

−0.87

−1.77

−1.59

−0.90

−0.66

−0.02

ND

−1.15

−0.79

−0.28

ND

−1.13

−0.71

−0.26

ND

0.87

0.92

LOC_Os07g11910

PROLM20

0.53

ND

−1.58

−8.57

0.15

ND

−1.34

−9.94

0.36

ND

−2.11

−8.37

−0.39

ND

−1.88

−9.75

−0.18

ND

1.72

9.08

0.23

ND

1.93

8.96

−1.49

−10.45

0.21

ND

1.70

10.33

LOC_Os07g10570

PROLM25

0.04

ND

−0.09

ND

0.62

ND

−0.07

ND

2.74

1.04

−0.13

ND

0.59

ND

−0.10

ND

2.71

1.26

0.71

ND

0.02

ND

2.83

1.25

−0.69

ND

2.12

1.59

2.81

2.07

LOC_Os12g17010

PROLM29

−3.22

−2.84

−1.22

−1.39

2.37

9.23

−2.99

−3.25

−2.57

−2.62

2.00

1.46

5.59

12.07

0.23

ND

0.65

ND

3.59

10.62

−1.77

−1.86

−1.35

−1.24

−5.36

−12.48

−4.94

−11.85

0.42

ND

LOC_Os12g16880

PROLM27

−2.54

−2.39

−0.32

ND

2.08

5.95

−2.35

−1.98

0.06

ND

2.22

1.62

4.62

8.34

0.19

ND

2.60

2.09

2.40

6.72

−2.03

−1.21

0.38

ND

−4.43

−7.93

−2.02

−6.24

2.41

1.68

LOC_Os02g16830

Glu

−1.03

−0.55

0.00

ND

1.81

2.39

−0.51

ND

−0.11

0.48

1.03

0.94

2.84

2.94

0.52

0.41

0.92

1.03

1.81

1.99

−0.51

−0.53

−0.11

ND

−2.32

−2.52

−1.92

−1.90

0.40

0.62

LOC_Os02g14600

Glu

−0.54

−0.67

1.22

1.05

0.88

0.43

0.62

ND

0.35

ND

1.76

1.72

1.42

1.10

1.17

0.83

0.90

0.55

−0.34

−0.62

−0.59

−0.89

−0.86

−1.18

−0.25

ND

−0.52

−0.56

−0.27

ND

LOC_Os02g14720

GW2

0.05

ND

0.65

0.70

0.82

0.75

0.28

ND

0.29

ND

0.59

0.85

0.77

0.90

0.23

ND

0.24

ND

0.17

ND

−0.36

−0.63

−0.36

−0.43

−0.54

−0.69

−0.53

−0.49

0.01

ND

LOC_Os04g33740

GIF1

−0.12

ND

0.34

ND

1.39

1.14

−0.95

−0.66

−0.13

ND

0.46

0.56

1.50

1.41

−0.83

ND

−0.02

ND

1.05

0.85

−1.29

−0.95

−0.47

ND

−2.34

−1.81

−1.52

−1.09

0.82

0.72

LOC_Os07g39480

WRKY78

−0.26

ND

−0.06

ND

−0.08

ND

−0.60

−0.46

−1.95

−0.98

0.21

ND

0.19

ND

−0.34

ND

−1.69

−0.93

−0.02

ND

−0.55

−0.65

−1.90

−1.17

−0.53

ND

−1.88

−0.74

−1.35

−0.52

LOC_Os07g08420

RISBZ1

0.31

ND

0.56

0.68

0.36

0.46

−0.06

ND

1.10

1.06

0.25

0.57

0.05

ND

−0.37

ND

0.79

0.94

−0.20

ND

−0.62

−0.80

0.54

ND

−0.42

−0.58

0.74

0.60

1.16

1.18

  1. FCs are expressed as log2FC, where FC = expression of the gene in the second cv indicated with respect to the first one; ND = not determined