Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout

Figueiredo, Henrique C. P.; Soares, Siomar C.; Pereira, Felipe L.; Dorella, Fernanda A.; Carvalho, Alex F.; Teixeira, Júnia P.; Azevedo, Vasco A. C.; Leal, Carlos A. G.

doi:10.1186/s12864-015-2324-4

BMC Genomics

Table 1 General features of Weissella species

From: Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout

Species	Strain	Country of isolation	Year of isolation	Farm^a	GenBank Accession Number	Genome size (bp)	CDSs	Pseudogenes	rRNAs	tRNAs	tmRNAs	Hypothetical proteins (%)	Gene Mean length (bp)	Gene density (genes/kb)	Coding percentage	GC Content of Genes (%)	GC Content of Genome (%)
Weissella ceti	WS08	Brazil	2008	1	CP007588	1,355,853	1270	1	19	75	1	21.55	921	0.936	86.3	41.44	40.78
Weissella ceti	WS74	Brazil	2010	5	CP009223	1,389,513	1338	3	19	77	1	24.58	895	0.962	86.2	41.39	40.75
Weissella ceti	WS105	Brazil	2012	8	CP009224	1,390,396	1338	2	18	71	1	24.73	896	0.962	86.2	41.40	40.75
Weissella ceti	NC36^b	USA	2011	–	ANCA00000000	1,352,640	1258	–	16	68	1^c	23.29	932	0.930	86.6	41.46	40.76
Weissella koreensis	KACC 15510	–	–	–	CP002899	1,422,478	1335	–	15	56	1^c	22.90	906	0.938	85.0	36.49	35.48
Weissella koreensis	KCTC 3621^b	–	–	–	AKGG00000000	1,728,940	1672	–	17	61	1^c	42.34	874	0.967	84.5	36.47	35.51
Weissella cibaria	KACC 11862^b	–	–	–	AEKT00000000	2,317,857	2095	–	6	69	1^c	26.54	962	0.903	87.0	46.13	45.15
Weissella cibaria	AB3b^b	–	–	–	JWHV00000000	2,458,770	2321	–	7	62	1^c	27.83	919	0.943	86.8	45.66	44.68
Weissella cibaria	ff3PR^b	–	–	–	JWHT00000000	2,357,128	2178	–	7	64	1^c	25.48	937	0.924	86.6	45.86	44.86
Weissella cibaria	MG1^b	–	–	–	JWHU00000000	2,430,822	2238	–	4	57	1^c	25.91	940	0.920	86.5	45.77	44.75
Weissella confusa	LBAE C39-2^b	–	–	–	CAGH00000000	2,284,024	2097	–	8	66	1^c	27.82	946	0.918	86.9	45.79	44.79
Weissella halotolerans	DSM 20190^b	–	–	–	ATUU00000000	1,358,385	1314	–	13	59	1^c	17.96	916	0.967	88.6	43.75	43.06
Weissella paramesenteroides	ATCC 33313^b	–	–	–	ACKU00000000	1,962,173	1917	–	3	63	1^c	23.19	888	0.976	86.8	38.75	37.88
Weissella oryzae	SG25^b	–	–	–	BAWR00000000	2,129,279	2143	–	7	70	1^c	29.49	852	1.006	85.8	39.95	38.90
Weissella thailandensis	fsh4-2^b	–	–	–	HE575133-HE575182	1,968,992	1,8924	–	4	66	1^c	18.84	899	0.961	86.5	39.66	38.74
Weissella hellenica	Wikim14^b	–	–	–	BBIK00000000	1,915,620	1858	–	17	68	1^c	19.96	884	0.969	85.8	37.46	36.61

^aPreviously described by Costa et. al. [14]
^bDraft genomes. Except for NC36, all other draft genomes had no annotation and were submitted to RAST
^cNot previously identified. Predicted in this work using the genome fasta file in ARAGORN v1.2.36 [70]

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com