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Table 1 General features of Weissella species

From: Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout

Species Strain Country of isolation Year of isolation Farma GenBank Accession Number Genome size (bp) CDSs Pseudogenes rRNAs tRNAs tmRNAs Hypothetical proteins (%) Gene Mean length (bp) Gene density (genes/kb) Coding percentage GC Content of Genes (%) GC Content of Genome (%)
Weissella ceti WS08 Brazil 2008 1 CP007588 1,355,853 1270 1 19 75 1 21.55 921 0.936 86.3 41.44 40.78
Weissella ceti WS74 Brazil 2010 5 CP009223 1,389,513 1338 3 19 77 1 24.58 895 0.962 86.2 41.39 40.75
Weissella ceti WS105 Brazil 2012 8 CP009224 1,390,396 1338 2 18 71 1 24.73 896 0.962 86.2 41.40 40.75
Weissella ceti NC36b USA 2011 ANCA00000000 1,352,640 1258 16 68 1c 23.29 932 0.930 86.6 41.46 40.76
Weissella koreensis KACC 15510 CP002899 1,422,478 1335 15 56 1c 22.90 906 0.938 85.0 36.49 35.48
Weissella koreensis KCTC 3621b AKGG00000000 1,728,940 1672 17 61 1c 42.34 874 0.967 84.5 36.47 35.51
Weissella cibaria KACC 11862b AEKT00000000 2,317,857 2095 6 69 1c 26.54 962 0.903 87.0 46.13 45.15
Weissella cibaria AB3bb JWHV00000000 2,458,770 2321 7 62 1c 27.83 919 0.943 86.8 45.66 44.68
Weissella cibaria ff3PRb JWHT00000000 2,357,128 2178 7 64 1c 25.48 937 0.924 86.6 45.86 44.86
Weissella cibaria MG1b JWHU00000000 2,430,822 2238 4 57 1c 25.91 940 0.920 86.5 45.77 44.75
Weissella confusa LBAE C39-2b CAGH00000000 2,284,024 2097 8 66 1c 27.82 946 0.918 86.9 45.79 44.79
Weissella halotolerans DSM 20190b ATUU00000000 1,358,385 1314 13 59 1c 17.96 916 0.967 88.6 43.75 43.06
Weissella paramesenteroides ATCC 33313b ACKU00000000 1,962,173 1917 3 63 1c 23.19 888 0.976 86.8 38.75 37.88
Weissella oryzae SG25b BAWR00000000 2,129,279 2143 7 70 1c 29.49 852 1.006 85.8 39.95 38.90
Weissella thailandensis fsh4-2b HE575133-HE575182 1,968,992 1,8924 4 66 1c 18.84 899 0.961 86.5 39.66 38.74
Weissella hellenica Wikim14b BBIK00000000 1,915,620 1858 17 68 1c 19.96 884 0.969 85.8 37.46 36.61
  1. aPreviously described by Costa et. al. [14]
  2. bDraft genomes. Except for NC36, all other draft genomes had no annotation and were submitted to RAST
  3. cNot previously identified. Predicted in this work using the genome fasta file in ARAGORN v1.2.36 [70]