Skip to main content

Table 1 Categorization of differentially expressed transcription factors in cluster 5, cluster 8 and cluster 10

From: Transcriptome analysis of secondary cell wall development in Medicago truncatula

Category Occurrence P-value*
MYB 30 0.921
b-ZIP 28 0.014
NAC 24 0.004
WRKY 24 0.06
C2H2 (ZF) 21 0.115
AP2/EREBP 20 0.687
HB 19 0.122
bHLH 17 0.869
C2C2 (ZF) 8 0.97
HSF 8 0.13
C3H (ZF) 6 0.901
MADS 6 0.949
AUX/IAA 5 0.186
CCAAT-binding 5 0.727
Scarecrow 5 -
RING (ZF) 4 -
ARF 3 0.994
SPF1 3 -
AOPBP 2 -
E2F 2 0.194
GARP 2 0.989
SREBP 2 -
BES1/BZR1 1 0.374
DELLA 1 -
DnaJ protein 1 -
EIL protein 1 0.69
GT-1 1 -
LIM 1 0.374
LOB 1 -
Phaseolin G-box binding 1 -
PHD (ZF) 1 0.999
TCP 1 -
TFIIIB 1 -
TGACG-BP 1 -
Trihelix 1 0.209
Others 34  
  1. *A total of 291 putative transcription factor genes from cluster 5, 8, and 10 were categorized based on functional domains. The distribution as frequencies of occurrence was presented in column 2. *P values were calculated in hypergeometric distribution analysis as the following: The proportion of transcription factors of a given class was compared with the proportion of that class in the whole set of transcription factors. AOPBP, ascorbate oxidase promoter-binding protein. SREBP, sucrose-responsive element binding factor. The classification of the transcription factors can be found at http://mtgea.noble.org/