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Table 3 Distribution in main functional categories of transcripts differentially expressed in response to Fe-citrate and Fe-PS supply respectively

From: Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent

-Fe/Fe-citrate vs -Fe

-Fe/Fe-PS vs -Fe

GO Class ID

Definitions

Counts

Fractions

GO Class ID

Definitions

Counts

Fractions

GO:0008150

biological_process

178

27.34 %

GO:0008150

biological_process

122

27.05 %

GO:0009987

cellular process

118

18.13 %

GO:0009987

cellular process

80

17.74 %

GO:0008152

metabolic process

101

15.51 %

GO:0008152

metabolic process

76

16.85 %

GO:0009058

biosynthetic process

33

5.07 %

GO:0009058

biosynthetic process

27

5.99 %

GO:0006139

nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

24

3.69 %

GO:0006139

nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

18

3.99 %

GO:0016043

cellular component organization and biogenesis

23

3.53 %

GO:0019538

protein metabolic process

16

3.55 %

GO:0019538

protein metabolic process

22

3.38 %

GO:0006810

transport

13

2.88 %

GO:0006810

transport

20

3.07 %

GO:0005975

carbohydrate metabolic process

11

2.44 %

GO:0009056

catabolic process

17

2.61 %

GO:0009056

catabolic process

11

2.44 %

GO:0005975

carbohydrate metabolic process

13

2.00 %

GO:0006629

lipid metabolic process

9

2.00 %

GO:0006950

response to stress

12

1.84 %

GO:0016043

cellular component organization and biogenesis

8

1.77 %

GO:0007154

cell communication

9

1.38 %

GO:0007165

signal transduction

6

1.33 %

GO:0006091

generation of precursor metabolites and energy

9

1.38 %

GO:0007154

cell communication

6

1.33 %

GO:0007165

signal transduction

8

1.23 %

GO:0006950

response to stress

6

1.33 %

GO:0006464

protein modification process

8

1.23 %

GO:0006464

protein modification process

6

1.33 %

GO:0006259

DNA metabolic process

6

0.92 %

GO:0006091

generation of precursor metabolites and energy

5

1.11 %

GO:0006629

lipid metabolic process

6

0.92 %

GO:0006259

DNA metabolic process

4

0.89 %

GO:0009628

response to abiotic stimulus

5

0.77 %

GO:0006412

translation

4

0.89 %

GO:0009719

response to endogenous stimulus

5

0.77 %

GO:0015979

photosynthesis

3

0.67 %

GO:0006412

translation

5

0.77 %

GO:0016265

death

2

0.44 %

GO:0015979

photosynthesis

4

0.61 %

GO:0009628

response to abiotic stimulus

2

0.44 %

GO:0016265

death

3

0.46 %

GO:0009607

response to biotic stimulus

2

0.44 %

GO:0008219

cell death

3

0.46 %

GO:0009719

response to endogenous stimulus

2

0.44 %

GO:0000003

reproduction

2

0.31 %

GO:0008219

cell death

2

0.44 %

GO:0009607

response to biotic stimulus

2

0.31 %

GO:0040007

growth

2

0.44 %

GO:0007275

multicellular organismal development

2

0.31 %

GO:0000003

reproduction

1

0.22 %

GO:0040007

growth

2

0.31 %

GO:0009791

post-embryonic development

1

0.22 %

GO:0007049

cell cycle

2

0.31 %

GO:0009605

response to external stimulus

1

0.22 %

GO:0009791

post-embryonic development

1

0.15 %

GO:0009908

flower development

1

0.22 %

GO:0009653

anatomical structure morphogenesis

1

0.15 %

GO:0007275

multicellular organismal development

1

0.22 %

GO:0009605

response to external stimulus

1

0.15 %

GO:0016049

cell growth

1

0.22 %

GO:0009908

flower development

1

0.15 %

GO:0019725

cell homeostasis

1

0.22 %

GO:0019748

secondary metabolic process

1

0.15 %

GO:0007049

cell cycle

1

0.22 %

GO:0016049

cell growth

1

0.15 %

Total

 

451

100.00 %

GO:0009875

pollen-pistil interaction

1

0.15 %

    

GO:0019725

cell homeostasis

1

0.15 %

    

GO:0009856

pollination

1

0.15 %

    

Total

 

651

100.00 %

    
  1. The distribution in main functional categories on the basis of “biological process” terms was performed using CateGOrizer [79] setting Plant GO slim method and consolidated single occurrences. The analysis was performed using the GO terms of the 643 and 344 transcripts differentially expressed in response to Fe-citrate and Fe-PS respectively and showing homology to “known protein”