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Table 6 Distribution in main functional categories of transcripts specifically affected by Fe-PS supply

From: Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent

Upregultated

Downregulated

GO Class ID

Definitions

Counts

Fractions

GO Class ID

Definitions

Counts

Fractions

GO:0008150

biological_process

19

27.94 %

GO:0008150

biological_process

32

29.36 %

GO:0008152

metabolic process

14

20.59 %

GO:0008152

metabolic process

20

18.35 %

GO:0009987

cellular process

11

16.18 %

GO:0009987

cellular process

19

17.43 %

GO:0009058

biosynthetic process

5

7.35 %

GO:0019538

protein metabolic process

6

5.50 %

GO:0019538

protein metabolic process

5

7.35 %

GO:0006139

nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

5

4.59 %

GO:0006139

nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

2

2.94 %

GO:0006629

lipid metabolic process

4

3.67 %

GO:0006464

protein modification process

2

2.94 %

GO:0006810

transport

3

2.75 %

GO:0005975

carbohydrate metabolic process

2

2.94 %

GO:0006464

protein modification process

3

2.75 %

GO:0009056

catabolic process

2

2.94 %

GO:0005975

carbohydrate metabolic process

3

2.75 %

GO:0006810

transport

1

1.47 %

GO:0016043

cellular component organization and biogenesis

2

1.83 %

GO:0007165

signal transduction

1

1.47 %

GO:0007165

signal transduction

2

1.83 %

GO:0007154

cell communication

1

1.47 %

GO:0007154

cell communication

2

1.83 %

GO:0006091

generation of precursor metabolites and energy

1

1.47 %

GO:0006950

response to stress

2

1.83 %

GO:0006412

translation

1

1.47 %

GO:0009058

biosynthetic process

2

1.83 %

GO:0006629

lipid metabolic process

1

1.47 %

GO:0009056

catabolic process

2

1.83 %

Total

 

68

100.00 %

GO:0006259

DNA metabolic process

1

0.92 %

    

GO:0009719

response to endogenous stimulus

1

0.92 %

    

Total

 

109

100.00 %

  1. The distribution in main functional categories on the basis of “biological process” terms was performed using CateGOrizer [79] setting Plant GO slim method and consolidated single occurrences. The analysis was performed using the GO terms of the 27 and 61 transcripts positively and negatively affected respectively in response to Fe-PS and showing homology to “known protein”