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Table 4 Consensus cis -regulatory elements of differentially expressed specific genes in two tolerant NILs under different WD treatments

From: Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

IR77298-14-1-2-B-10 IR77298-5-6-B-18
Motif Matching to Lift Confidence Motif Matching to Lift Confidence
Up-regulated
 Severe water-deficit        
  (AGATT){2} Myb 1.89 0.014 (TGAGTCAG){1,2} MADS(AP1) 1.504 0.038
  (CTGACTCA){1,2} Unkown 1.737 0.045 ([TGCA]TTC[TGCA]){3} Unkown 2.272 0.075
  ([CT]AAC[GT]G){2} Myb 2.109 0.005 ATGTCCGTA Unkown 1.814 0.005
  ATGTCCGTA Unkown 1.52 0.005 CAAT[AT]ATTG HD-ZIP 1.892 0.054
  GACAAGT GGC Unkown 6.667 0.009 CAAT[TA]ATTG Unkown 1.892 0.054
  GGTACTAACCA Unkown 12.92 0.005 GACAAGTGGC Unkown 7.958 0.011
  TGACAGTGTCA ACE2 8.612 0.005 GCAC[AG][ACGT][AT]TCCC[AG]A[ACGT]G[CT] AP2;YABBY 13.705 0.005
  TGGTTAGTACC TFIIIA 11.48 0.005 TTGTACG[TGCA]A Unkown 2.548 0.054
  T[ACGT]CGTACAA SBP 2.363 0.05 T[ACGT]CGTACAA SBP 1.795 0.038
  [GA]C[TGCA]T[TC]GGGA[TA][TGCA][TC]GTGC Unkown 20.67 0.005     
 Mild water-deficit
  (C[CA]GTT[GA]){2} Unkown 3.271 0.006 (AATCT){2} Unkown 2.747 0.023
  ATGTCCGTA Unkown 2.02 0.006 (C[CA]GTT[GA]){2} Unkown 3.139 0.006
  GCAC[AG][ACGT][AT]TCCC[AG]A[ACGT]G[CT] AP2;YABBY 7.632 0.003 CAAT[CG]ATTG Unkown 2.087 0.034
  GGCTAATAA Plant C2H2 2.252 0.018 CAAT[GC]ATTG HD-ZIP 2.087 0.034
  TGACAGTGTCA ACE2 5.724 0.003 GCAC[AG][ACGT][AT]TCCC[AG]A[ACGT]G[CT] AP2;YABBY 14.65 0.006
  TGACA[ACGT][ACGT][ACGT][ACGT]TGTCA WHIRLY 2.369 0.006 GTCAAAA[AT] WHIRLY;WRKY 1.52 0.213
  TGACA[TGCA][TGCA][TGCA][TGCA]TGTCA Unkown 2.369 0.006 TACGGACAT AP2 1.806 0.006
     TGACA[ACGT][ACGT][ACGT][ACGT]TGTCA WHIRLY 2.273 0.006
     TGACA[TGCA][TGCA][TGCA][TGCA]TGTCA Unkown 2.273 0.006
Down-regulated
 Severe water-deficit
  (AATCT){2} Unkown 1.81 0.015 ([ACGT]GAA[ACGT]){3} HSF 1.882 0.072
  (CTGACTCA){1,2} Unkown 2.045 0.053 ([CT]AAC[GT]G){2} Myb 5.641 0.012
  CAAT[AT]ATTG HD-ZIP 1.866 0.053 ATGTCCGTA Unkown 8.13 0.024
  CAAT[TA]ATTG Unkown 1.866 0.053 CAAT[CG]ATTG Unkown 1.823 0.03
  GCGT[ACGT]{7}ACGC VOZ-9 2.705 0.03 CAAT[GC]ATTG HD-ZIP 1.823 0.03
  GCGT[TGCA]{7}ACGC Unkown 2.705 0.03 GACAAGTGGC Unkown 4.458 0.006
  TGACA[ACGT][ACGT][ACGT][ACGT]TGTCA WHIRLY 2.997 0.008 GCGT[ACGT]{7}ACGC VOZ-9 2.151 0.024
  TGACA[TGCA][TGCA][TGCA][TGCA]TGTCA Unkown 2.997 0.008 GCGT[TGCA]{7}ACGC Unkown 2.151 0.024
  TTATTAGCC Unkown 2.021 0.015 TACGGACAT AP2 3.786 0.012
  TTGTACG[TGCA]A Unkown 1.795 0.038 TGACA[ACGT][ACGT][ACGT][ACGT]TGTCA WHIRLY 2.383 0.006
     TGACA[TGCA][TGCA][TGCA][TGCA]TGTCA Unkown 2.383 0.006
     TTATTAGCC Unkown 1.607 0.012
 Mild water-deficit
  (AGATT){2} Myb 1.525 0.011 ([CG]GCGC[GC]){2} Fork head 1.593 0.051
  ([CG]GCGC[GC]){2} Fork head 1.541 0.049 CAAT[CG]ATTG Unkown 1.674 0.028
  CAAT[CG]ATTG Unkown 1.979 0.033 CAAT[GC]ATTG HD-ZIP 1.674 0.028
  CAAT[GC]ATTG HD-ZIP 1.979 0.033 GACAAGTGGC Unkown 3.41 0.005
  GACAAGTGGC Unkown 2.017 0.003 TACGGACAT AP2 2.897 0.009
  TGACAGTGTCA ACE2 5.209 0.003 TGACA[ACGT][ACGT][ACGT][ACGT]TGTCA WHIRLY 1.823 0.005
  T[ACGT]CGTACAA SBP 1.56 0.033 TGACA[TGCA][TGCA][TGCA][TGCA]TGTCA Unkown 1.823 0.005
     TTGTACG[TGCA]A Unkown 1.529 0.032
  1. Motif: Examined sequences. Matching to: Destination from built in list of known plant cis -element of which the examined motif matches to. Lift, Confidence: Index of association rule analysis