Table 2 Regions or single markers in Glyma1.01 that required re-positioning or reorientation based upon marker orders supported by both or either the W82 x PI79752 and/or the Essex x W82 mapping data
First marker in the interval | Last marker in the interval | Comment | Supporting map data | ||||
|---|---|---|---|---|---|---|---|
SNP ID | Chromosome | Physical position | SNP ID | Chromosome | Physical position | ||
BARC_1.01_Gm02_22523407_T_C | Gm02 | 22,523,407 | BARC_1.01_Gm02_22917212_A_G | Gm02 | 22,917,212 | Move to Gm15 | WP and EW |
BARC_1.01_Gm02_26182810_A_G | Gm02 | 26,182,810 | BARC_1.01_Gm02_27329992_A_G | Gm02 | 27,329,992 | Move to Gm13 | WP and EW |
BARC_1.01_Gm02_43000450_C_T | Gm02 | 43,000,450 | BARC_1.01_Gm02_43043202_A_C | Gm02 | 43,043,202 | Re-orient | WP and EW |
BARC_1.01_Gm03_5530681_A_G | Gm03 | 5530681 | BARC_1.01_Gm03_6597027_G_A | Gm03 | 6597027 | Re-orient | WP and EW |
BARC_1.01_Gm04_29510350_C_A | Gm04 | 29,510,350 | BARC_1.01_Gm04_29566738_A_G | Gm04 | 29,566,738 | Re-orient and move to Gm18 | WP and EW |
BARC_1.01_Gm05_8031928_A_C | Gm05 | 8,031,928 | BARC_1.01_Gm05_9066302_T_C | Gm05 | 9,066,302 | Move to top of chromosome | WP and EW |
BARC_1.01_Gm05_9616597_C_T | Gm05 | 9,616,597 | BARC_1.01_Gm05_16324558_C_T | Gm05 | 16,324,558 | Re-orient | WP and EW |
BARC_1.01_Gm05_16504006_C_T | Gm05 | 16504006 | BARC_1.01_Gm05_20385655_G_T | Gm05 | 20385655 | Re-orient | WP and EW |
BARC_1.01_Gm05_38634602_T_C | Gm05 | 38,634,602 | BARC_1.01_Gm05_41919487_G_T | Gm05 | 41,919,487 | Re-orient | WP and EW |
BARC_1.01_Gm07_10457480_C_A | Gm07 | 10,457,480 | BARC_1.01_Gm07_14773717_G_T | Gm07 | 14,773,717 | Re-orient | WP and EW |
BARC_1.01_Gm09_37436031_A_C | Gm09 | 37,436,031 | BARC_1.01_Gm09_37478410_A_G | Gm09 | 37,478,410 | Re-orient | WP and EW |
BARC_1.01_Gm10_14435077_T_C | Gm10 | 14,435,077 | BARC_1.01_Gm10_27968025_A_C | Gm10 | 27,968,025 | Re-orient | WP and EW |
BARC_1.01_Gm11_37808033_A_G | Gm11 | 37,808,033 | BARC_1.01_Gm11_39163663_A_G | Gm11 | 39,163,663 | Re-orient | WP and EW |
BARC_1.01_Gm12_18007551_G_T | Gm12 | 18,007,551 | BARC_1.01_Gm12_18239449_G_A | Gm12 | 18,239,449 | Move to Gm04 | WP and EW |
BARC_1.01_Gm13_5491_A_G | Gm13 | 5,491 | BARC_1.01_Gm13_20223181_A_G | Gm13 | 20,223,181 | Re-orient | WP and EW |
BARC_1.01_Gm13_35242360_T_C | Gm13 | 35,242,360 | BARC_1.01_Gm13_35307167_A_G | Gm13 | 35,307,167 | Move to Gm09 | WP and EW |
BARC_1.01_Gm15_10351491_G_T | Gm15 | 10,351,491 | BARC_1.01_Gm15_10427384_A_G | Gm15 | 10,427,384 | Move and Re-orient | WP and EW |
BARC_1.01_Gm15_36006344_T_C | Gm15 | 36,006,344 | BARC_1.01_Gm15_38303424_T_C | Gm15 | 38,303,424 | Move and Re-orient | WP and EW |
BARC_1.01_Gm17_9749711_A_G | Gm17 | 9,749,711 | Â | Â | Â | Move to Gm10 | WP and EW |
BARC_1.01_Gm18_24754213_G_T | Gm18 | 24,754,213 | BARC_1.01_Gm18_27432506_A_G | Gm18 | 27,432,506 | Move to Gm04 | WP and EW |
BARC_1.01_Gm19_12811558_G_A | Gm19 | 12811558 | BARC_1.01_Gm19_17460363_C_A | Gm19 | 17460363 | Re-orient | WP and EW |
BARC_1.01_Gm20_10352781_A_G | Gm20 | 10,352,781 | BARC_1.01_Gm20_19781743_T_C | Gm20 | 19,781,743 | A number of changes needed | WP and EW |
BARC_1.01_Gm01_16580419_T_G | Gm01 | 16580419 | BARC_1.01_Gm01_17671586_G_A | Gm01 | 17671586 | Re-orient | WP |
BARC_1.01_Gm02_27407299_A_G | Gm02 | 27407299 | BARC_1.01_Gm02_29498377_C_T | Gm02 | 29498377 | Re-orient | WP |
BARC_1.01_Gm03_16199297_C_T | Gm03 | 16199297 | BARC_1.01_Gm03_22901336_G_T | Gm03 | 22901336 | Re-orient | WP |
BARC_1.01_Gm04_34743951_T_C | Gm04 | 34743951 | BARC_1.01_Gm04_33785067_T_C | Gm04 | 33785067 | Move to Gm20 | WP |
BARC_1.01_Gm05_30871172_T_C | Gm05 | 30871172 | BARC_1.01_Gm05_30910003_G_A | Gm05 | 30910003 | Move to Gm11 | WP |
BARC_1.01_Gm08_44242727_C_T | Gm08 | 44242727 | BARC_1.01_Gm08_44632488_A_G | Gm08 | 44632488 | Re-orient | WP |
BARC_1.01_Gm10_42894189_C_T | Gm10 | 42894189 | BARC_1.01_Gm10_43004105_A_C | Gm10 | 43004105 | Re-orient | WP |
BARC_1.01_Gm13_34645498_A_G | Gm13 | 34645498 | BARC_1.01_Gm13_34658945_C_A | Gm13 | 34658945 | Re-orient | EW |
BARC_1.01_Gm14_48713607_A_G | Gm14 | 48713607 | BARC_1.01_Gm14_48755126_G_A | Gm14 | 48755126 | Re-orient | WP |
BARC_1.01_Gm15_25823658_T_C | Gm15 | 25823658 | BARC_1.01_Gm15_36378430_A_G | Gm15 | 36378430 | Re-orient | EW |
BARC_1.01_Gm16_5856598_G_A | Gm16 | 5856598 | BARC_1.01_Gm16_5887676_G_A | Gm16 | 5887676 | Re-orient | WP |
BARC_1.01_Gm16_17407537_T_G | Gm16 | 17407537 | BARC_1.01_Gm16_22593496_G_A | Gm16 | 22593496 | Re-orient | WP |
BARC_1.01_Gm19_3021_T_C | Gm19 | 3021 | BARC_1.01_Gm19_567731_A_G | Gm19 | 567731 | Re-orient | WP |
BARC_1.01_Gm20_7082863_T_G | Gm20 | 7082863 | BARC_1.01_Gm20_7419439_G_A | Gm20 | 7419439 | Re-orient | WP |
BARC_1.01_Gm20_18531300_T_C | Gm20 | 18531300 | BARC_1.01_Gm20_7419439_G_A | Gm20 | 20977430 | Re-orient | WP |