Table 2 List of species used during phylome reconstruction. Sources include UniProt (http://www.uniprot.org/), NCBI (http://www.ncbi.nlm.nih.gov/), http://fungalgenomes.org/data/, and in-house sequencing projects. If NCBI did not provide a gene prediction at the time a genome was downloaded, the gene prediction was done using AUGUSTUS [12].
From: Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum
TaxID | Species name | Source |
|---|---|---|
5057 | Aspergillus clavatus | UniProt |
5059 | Aspergillus flavus | UniProt |
5061 | Aspergillus niger | UniProt |
5075 | Penicillium camemberti | NCBI + Augustus |
5076 | Penicillium chrysogenum | |
5082 | Penicillium roqueforti | NCBI + Augustus |
27334 | Penicillium expansum | Sequencing project [19] |
36651 | Penicillium digitatum | Sequencing project [18] |
40296 | Penicillium italicum | Sequencing project [19] |
162425 | Emericella nidulans | UniProt |
330879 | Aspergillus fumigatus | UniProt |
441959 | Talaromyces stipitatus | NCBI |
441960 | Penicillium marneffei | |
933388 | Penicillium oxalicum | NCBI |
1495726 | Penicillium griseofulvum | Sequenced in this paper |