TY - JOUR AU - White, F. F. AU - Potnis, N. AU - Jones, J. B. AU - Koebnik, R. PY - 2009 DA - 2009// TI - The type III effectors of Xanthomonas JO - Molecular Plant Pathology VL - 10 UR - https://doi.org/10.1111/j.1364-3703.2009.00590.x DO - 10.1111/j.1364-3703.2009.00590.x ID - White2009 ER - TY - JOUR AU - Adhikari, T. B. AU - Gurung, S. AU - Hansen, J. M. AU - Bonman, J. M. PY - 2012 DA - 2012// TI - Pathogenic and genetic diversity of Xanthomonas translucens pv. Undulosa in North Dakota JO - Phytopathology VL - 102 UR - https://doi.org/10.1094/PHYTO-07-11-0201 DO - 10.1094/PHYTO-07-11-0201 ID - Adhikari2012 ER - TY - JOUR AU - Bragard, C. AU - Singer, E. AU - Alizadeh, A. AU - Vauterin, L. AU - Maraite, H. AU - Swings, J. PY - 1997 DA - 1997// TI - Xanthomonas translucens from small grains: diversity and phytopathological relevance JO - Phytopathology VL - 87 UR - https://doi.org/10.1094/PHYTO.1997.87.11.1111 DO - 10.1094/PHYTO.1997.87.11.1111 ID - Bragard1997 ER - TY - JOUR AU - Bragard, C. AU - Verdier, V. AU - Maraite, H. PY - 1995 DA - 1995// TI - Genetic diversity among Xanthomonas campestris strains pathogenic for small grains JO - Applied and environmental microbiology VL - 61 ID - Bragard1995 ER - TY - JOUR AU - Rademaker, J. AU - Norman, D. AU - Forster, R. AU - Louws, F. AU - Schultz, M. AU - Bruijn, F. PY - 2006 DA - 2006// TI - Classification and identification of Xanthomonas translucens isolates, including those pathogenic to ornamental asparagus JO - Phytopathology VL - 96 UR - https://doi.org/10.1094/PHYTO-96-0876 DO - 10.1094/PHYTO-96-0876 ID - Rademaker2006 ER - TY - JOUR AU - Bentley, D. R. PY - 2006 DA - 2006// TI - Whole-genome re-sequencing JO - Current opinion in genetics & development VL - 16 UR - https://doi.org/10.1016/j.gde.2006.10.009 DO - 10.1016/j.gde.2006.10.009 ID - Bentley2006 ER - TY - JOUR AU - Metzker, M. L. PY - 2010 DA - 2010// TI - Sequencing technologies—the next generation JO - Nature reviews genetics VL - 11 UR - https://doi.org/10.1038/nrg2626 DO - 10.1038/nrg2626 ID - Metzker2010 ER - TY - JOUR AU - Gardiner, D. M. AU - Upadhyaya, N. M. AU - Stiller, J. AU - Ellis, J. G. AU - Dodds, P. N. AU - Kazan, K. PY - 2014 DA - 2014// TI - Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems JO - PLoS One VL - 9 ID - Gardiner2014 ER - TY - JOUR AU - Wichmann, F. AU - Vorhölter, F. J. AU - Hersemann, L. AU - Widmer, F. AU - Blom, J. AU - Niehaus, K. PY - 2013 DA - 2013// TI - The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection JO - Molecular plant pathology VL - 14 UR - https://doi.org/10.1111/mpp.12030 DO - 10.1111/mpp.12030 ID - Wichmann2013 ER - TY - JOUR AU - Pesce, C. AU - Bolot, S. AU - Cunnac, S. AU - Portier, P. AU - Fischer-Le Saux, M. AU - Jacques, M. -. A. PY - 2015 DA - 2015// TI - High-quality draft genome sequence of the Xanthomonas translucens pv. cerealis pathotype strain CFBP 2541 JO - Genome announcements VL - 3 UR - https://doi.org/10.1128/genomeA.01574-14 DO - 10.1128/genomeA.01574-14 ID - Pesce2015 ER - TY - JOUR AU - Bashir, A. AU - Klammer, A. A. AU - Robins, W. P. AU - Chin, C. -. S. AU - Webster, D. AU - Paxinos, E. PY - 2012 DA - 2012// TI - A hybrid approach for the automated finishing of bacterial genomes JO - Nature biotechnology VL - 30 UR - https://doi.org/10.1038/nbt.2288 DO - 10.1038/nbt.2288 ID - Bashir2012 ER - TY - JOUR AU - Chin, C. -. S. AU - Alexander, D. H. AU - Marks, P. AU - Klammer, A. A. AU - Drake, J. AU - Heiner, C. PY - 2013 DA - 2013// TI - Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data JO - Nature methods VL - 10 UR - https://doi.org/10.1038/nmeth.2474 DO - 10.1038/nmeth.2474 ID - Chin2013 ER - TY - JOUR AU - Koren, S. AU - Schatz, M. C. AU - Walenz, B. P. AU - Martin, J. AU - Howard, J. T. AU - Ganapathy, G. PY - 2012 DA - 2012// TI - Hybrid error correction and de novo assembly of single-molecule sequencing reads JO - Nature biotechnology VL - 30 UR - https://doi.org/10.1038/nbt.2280 DO - 10.1038/nbt.2280 ID - Koren2012 ER - TY - JOUR AU - Kurtz, S. AU - Phillippy, A. AU - Delcher, A. L. AU - Smoot, M. AU - Shumway, M. AU - Antonescu, C. PY - 2004 DA - 2004// TI - Versatile and open software for comparing large genomes JO - Genome biology VL - 5 UR - https://doi.org/10.1186/gb-2004-5-2-r12 DO - 10.1186/gb-2004-5-2-r12 ID - Kurtz2004 ER - TY - JOUR AU - Barrangou, R. AU - Fremaux, C. AU - Deveau, H. AU - Richards, M. AU - Boyaval, P. AU - Moineau, S. PY - 2007 DA - 2007// TI - CRISPR provides acquired resistance against viruses in prokaryotes JO - Science VL - 315 UR - https://doi.org/10.1126/science.1138140 DO - 10.1126/science.1138140 ID - Barrangou2007 ER - TY - JOUR AU - Garneau, J. E. AU - Dupuis, M. -. È. AU - Villion, M. AU - Romero, D. A. AU - Barrangou, R. AU - Boyaval, P. PY - 2010 DA - 2010// TI - The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA JO - Nature VL - 468 UR - https://doi.org/10.1038/nature09523 DO - 10.1038/nature09523 ID - Garneau2010 ER - TY - JOUR AU - Horvath, P. AU - Romero, D. A. AU - Coûté-Monvoisin, A. -. C. AU - Richards, M. AU - Deveau, H. AU - Moineau, S. PY - 2008 DA - 2008// TI - Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus JO - Journal of bacteriology VL - 190 UR - https://doi.org/10.1128/JB.01415-07 DO - 10.1128/JB.01415-07 ID - Horvath2008 ER - TY - JOUR AU - Marraffini, L. A. AU - Sontheimer, E. J. PY - 2010 DA - 2010// TI - CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea JO - Nature Reviews Genetics VL - 11 UR - https://doi.org/10.1038/nrg2749 DO - 10.1038/nrg2749 ID - Marraffini2010 ER - TY - JOUR AU - Makarova, K. S. AU - Haft, D. H. AU - Barrangou, R. AU - Brouns, S. J. AU - Charpentier, E. AU - Horvath, P. PY - 2011 DA - 2011// TI - Evolution and classification of the CRISPR–Cas systems JO - Nature Reviews Microbiology VL - 9 UR - https://doi.org/10.1038/nrmicro2577 DO - 10.1038/nrmicro2577 ID - Makarova2011 ER - TY - JOUR AU - Pieretti, I. AU - Royer, M. AU - Barbe, V. AU - Carrere, S. AU - Koebnik, R. AU - Cociancich, S. PY - 2009 DA - 2009// TI - The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae JO - BMC genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-616 DO - 10.1186/1471-2164-10-616 ID - Pieretti2009 ER - TY - JOUR AU - Bart, R. AU - Cohn, M. AU - Kassen, A. AU - McCallum, E. J. AU - Shybut, M. AU - Petriello, A. PY - 2012 DA - 2012// TI - High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance JO - Proceedings of the National Academy of Sciences VL - 109 UR - https://doi.org/10.1073/pnas.1208003109 DO - 10.1073/pnas.1208003109 ID - Bart2012 ER - TY - JOUR AU - Hu, Y. AU - Zhang, J. AU - Jia, H. AU - Sosso, D. AU - Li, T. AU - Frommer, W. B. PY - 2014 DA - 2014// TI - Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease JO - Proceedings of the National Academy of Sciences VL - 111 UR - https://doi.org/10.1073/pnas.1313271111 DO - 10.1073/pnas.1313271111 ID - Hu2014 ER - TY - JOUR AU - Strauß, T. AU - Poecke, R. M. AU - Strauß, A. AU - Römer, P. AU - Minsavage, G. V. AU - Singh, S. PY - 2012 DA - 2012// TI - RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome JO - Proceedings of the National Academy of Sciences VL - 109 UR - https://doi.org/10.1073/pnas.1212415109 DO - 10.1073/pnas.1212415109 ID - Strauß2012 ER - TY - JOUR AU - Koren, S. AU - Phillippy, A. M. PY - 2015 DA - 2015// TI - One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly JO - Curr Opin Microbiol VL - 23 UR - https://doi.org/10.1016/j.mib.2014.11.014 DO - 10.1016/j.mib.2014.11.014 ID - Koren2015 ER - TY - JOUR AU - Boch, J. AU - Scholze, H. AU - Schornack, S. AU - Landgraf, A. AU - Hahn, S. AU - Kay, S. PY - 2009 DA - 2009// TI - Breaking the code of DNA binding specificity of TAL-type III effectors JO - Science VL - 326 UR - https://doi.org/10.1126/science.1178811 DO - 10.1126/science.1178811 ID - Boch2009 ER - TY - STD TI - Moscou MJ, Bogdanove AJ. A simple cipher governs DNA recognition by TAL effectors. Science. 2009;326(5959):1501–1. ID - ref26 ER - TY - JOUR AU - Ashton, P. M. AU - Nair, S. AU - Dallman, T. AU - Rubino, S. AU - Rabsch, W. AU - Mwaigwisya, S. PY - 2015 DA - 2015// TI - MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island JO - Nat Biotechnol VL - 33 UR - https://doi.org/10.1038/nbt.3103 DO - 10.1038/nbt.3103 ID - Ashton2015 ER - TY - JOUR AU - Loman, N. J. AU - Watson, M. PY - 2015 DA - 2015// TI - Successful test launch for nanopore sequencing JO - Nat Methods VL - 12 UR - https://doi.org/10.1038/nmeth.3327 DO - 10.1038/nmeth.3327 ID - Loman2015 ER - TY - JOUR AU - Fang, G. AU - Munera, D. AU - Friedman, D. I. AU - Mandlik, A. AU - Chao, M. C. AU - Banerjee, O. PY - 2012 DA - 2012// TI - Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing JO - Nature biotechnology VL - 30 UR - https://doi.org/10.1038/nbt.2432 DO - 10.1038/nbt.2432 ID - Fang2012 ER - TY - JOUR AU - Jones, J. D. AU - Dangl, J. L. PY - 2006 DA - 2006// TI - The plant immune system JO - Nature VL - 444 UR - https://doi.org/10.1038/nature05286 DO - 10.1038/nature05286 ID - Jones2006 ER - TY - JOUR AU - Tai, T. H. AU - Dahlbeck, D. AU - Clark, E. T. AU - Gajiwala, P. AU - Pasion, R. AU - Whalen, M. C. PY - 1999 DA - 1999// TI - Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato JO - Proceedings of the National Academy of Sciences VL - 96 UR - https://doi.org/10.1073/pnas.96.24.14153 DO - 10.1073/pnas.96.24.14153 ID - Tai1999 ER - TY - JOUR AU - Mellano, V. J. AU - Cooksey, D. A. PY - 1988 DA - 1988// TI - Development of host range mutants of Xanthomonas campestris pv. translucens JO - Applied and environmental microbiology VL - 54 ID - Mellano1988 ER - TY - JOUR AU - Waney, V. AU - Kingsley, M. AU - Gabriel, D. PY - 1991 DA - 1991// TI - Xanthomonas campestris pv. translucens genes determining host-specific virulence and general virulence on cereals identified by Tn5-gusA insertion mutagenesis JO - Mol Plant-Microbe Interact VL - 4 UR - https://doi.org/10.1094/MPMI-4-623 DO - 10.1094/MPMI-4-623 ID - Waney1991 ER - TY - JOUR AU - Boch, J. AU - Bonas, U. PY - 2010 DA - 2010// TI - Xanthomonas AvrBs3 family-type III effectors: discovery and function JO - Annual review of phytopathology VL - 48 UR - https://doi.org/10.1146/annurev-phyto-080508-081936 DO - 10.1146/annurev-phyto-080508-081936 ID - Boch2010 ER - TY - JOUR AU - White, F. F. AU - Yang, B. PY - 2009 DA - 2009// TI - Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction JO - Plant Physiology VL - 150 UR - https://doi.org/10.1104/pp.109.139360 DO - 10.1104/pp.109.139360 ID - White2009 ER - TY - JOUR AU - Antony, G. AU - Zhou, J. AU - Huang, S. AU - Li, T. AU - Liu, B. AU - White, F. PY - 2010 DA - 2010// TI - Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11 N3 JO - The Plant Cell VL - 22 UR - https://doi.org/10.1105/tpc.110.078964 DO - 10.1105/tpc.110.078964 ID - Antony2010 ER - TY - JOUR AU - Cernadas, R. A. AU - Doyle, E. L. AU - Niño-Liu, D. O. AU - Wilkins, K. E. AU - Bancroft, T. AU - Wang, L. PY - 2014 DA - 2014// TI - Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene JO - PLoS Pathog VL - 10 UR - https://doi.org/10.1371/journal.ppat.1003972 DO - 10.1371/journal.ppat.1003972 ID - Cernadas2014 ER - TY - JOUR AU - Kay, S. AU - Hahn, S. AU - Marois, E. AU - Hause, G. AU - Bonas, U. PY - 2007 DA - 2007// TI - A bacterial effector acts as a plant transcription factor and induces a cell size regulator JO - Science VL - 318 UR - https://doi.org/10.1126/science.1144956 DO - 10.1126/science.1144956 ID - Kay2007 ER - TY - JOUR AU - Li, Z. AU - Zou, L. AU - Ye, G. AU - Xiong, L. AU - Ji, Z. AU - Zakria, M. PY - 2014 DA - 2014// TI - A Potential disease susceptibility gene CsLOB of citrus is targeted by a major virulence effector PthA of Xanthomonas citri subsp. citri JO - Molecular plant VL - 7 UR - https://doi.org/10.1093/mp/sst176 DO - 10.1093/mp/sst176 ID - Li2014 ER - TY - JOUR AU - Wichmann, G. AU - Bergelson, J. PY - 2004 DA - 2004// TI - Effector genes of Xanthamonas axonopodis pv. vesicatoria promote transmission and enhance other fitness traits in the field JO - Genetics VL - 166 UR - https://doi.org/10.1534/genetics.166.2.693 DO - 10.1534/genetics.166.2.693 ID - Wichmann2004 ER - TY - JOUR AU - Yang, B. AU - Sugio, A. AU - White, F. F. PY - 2006 DA - 2006// TI - Os8N3 is a host disease-susceptibility gene for bacterial blight of rice JO - Proceedings of the National Academy of Sciences VL - 103 UR - https://doi.org/10.1073/pnas.0604088103 DO - 10.1073/pnas.0604088103 ID - Yang2006 ER - TY - JOUR AU - Yang, Y. AU - Feyter, R. AU - Gabriel, D. W. PY - 1994 DA - 1994// TI - Host-specific symptoms and increased release of Xanthomonas citri and X. campestris pv. malvacearum from leaves are determined by the 102-bp tandem repeats of pthA and avrb6, respectively JO - MPMI-Molecular Plant Microbe Interactions VL - 7 UR - https://doi.org/10.1094/MPMI-7-0345 DO - 10.1094/MPMI-7-0345 ID - Yang1994 ER - TY - JOUR AU - Zhou, J. AU - Peng, Z. AU - Long, J. AU - Sosso, D. AU - Liu, B. AU - Eom, J. S. PY - 2015 DA - 2015// TI - Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice JO - The Plant Journal VL - 82 UR - https://doi.org/10.1111/tpj.12838 DO - 10.1111/tpj.12838 ID - Zhou2015 ER - TY - JOUR AU - Cohn, M. AU - Bart, R. S. AU - Shybut, M. AU - Dahlbeck, D. AU - Gomez, M. AU - Morbitzer, R. PY - 2014 DA - 2014// TI - Xanthomonas axonopodis virulence is promoted by a transcription activator-like effector-mediated induction of a SWEET sugar transporter in cassava JO - Molecular Plant-Microbe Interactions VL - 27 UR - https://doi.org/10.1094/MPMI-06-14-0161-R DO - 10.1094/MPMI-06-14-0161-R ID - Cohn2014 ER - TY - JOUR AU - Hummel, A. W. AU - Doyle, E. L. AU - Bogdanove, A. J. PY - 2012 DA - 2012// TI - Addition of transcription activator‐like effector binding sites to a pathogen strain‐specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak JO - New Phytologist VL - 195 UR - https://doi.org/10.1111/j.1469-8137.2012.04216.x DO - 10.1111/j.1469-8137.2012.04216.x ID - Hummel2012 ER - TY - STD TI - Zeng X, Tian D, Gu K, Zhou Z, Yang X, Luo Y, et al. Genetic engineering of the Xa10 promoter forbroad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae. Plant Biotechnol J. 2015;13(7):993-1001. ID - ref46 ER - TY - JOUR AU - Yang, B. AU - White, F. F. PY - 2004 DA - 2004// TI - Diverse members of the AvrBs3/PthA family of type III effectors are major virulence determinants in bacterial blight disease of rice JO - Molecular plant-microbe interactions VL - 17 UR - https://doi.org/10.1094/MPMI.2004.17.11.1192 DO - 10.1094/MPMI.2004.17.11.1192 ID - Yang2004 ER - TY - JOUR AU - Li, R. AU - Zhu, H. AU - Ruan, J. AU - Qian, W. AU - Fang, X. AU - Shi, Z. PY - 2010 DA - 2010// TI - De novo assembly of human genomes with massively parallel short read sequencing JO - Genome research VL - 20 UR - https://doi.org/10.1101/gr.097261.109 DO - 10.1101/gr.097261.109 ID - Li2010 ER - TY - JOUR AU - Li, H. AU - Durbin, R. PY - 2010 DA - 2010// TI - Fast and accurate long-read alignment with Burrows–Wheeler transform JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp698 DO - 10.1093/bioinformatics/btp698 ID - Li2010 ER - TY - JOUR AU - DePristo, M. A. AU - Banks, E. AU - Poplin, R. AU - Garimella, K. V. AU - Maguire, J. R. AU - Hartl, C. PY - 2011 DA - 2011// TI - A framework for variation discovery and genotyping using next-generation DNA sequencing data JO - Nature genetics VL - 43 UR - https://doi.org/10.1038/ng.806 DO - 10.1038/ng.806 ID - DePristo2011 ER - TY - JOUR AU - McKenna, A. AU - Hanna, M. AU - Banks, E. AU - Sivachenko, A. AU - Cibulskis, K. AU - Kernytsky, A. PY - 2010 DA - 2010// TI - The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data JO - Genome research VL - 20 UR - https://doi.org/10.1101/gr.107524.110 DO - 10.1101/gr.107524.110 ID - McKenna2010 ER - TY - JOUR AU - Overbeek, R. AU - Olson, R. AU - Pusch, G. D. AU - Olsen, G. J. AU - Davis, J. J. AU - Disz, T. PY - 2014 DA - 2014// TI - The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) JO - Nucleic acids research VL - 42 UR - https://doi.org/10.1093/nar/gkt1226 DO - 10.1093/nar/gkt1226 ID - Overbeek2014 ER - TY - JOUR AU - Siguier, P. AU - Pérochon, J. AU - Lestrade, L. AU - Mahillon, J. AU - Chandler, M. PY - 2006 DA - 2006// TI - ISfinder: the reference centre for bacterial insertion sequences JO - Nucleic acids research VL - 34 UR - https://doi.org/10.1093/nar/gkj014 DO - 10.1093/nar/gkj014 ID - Siguier2006 ER - TY - JOUR AU - Young, J. AU - Park, D. -. C. AU - Shearman, H. AU - Fargier, E. PY - 2008 DA - 2008// TI - A multilocus sequence analysis of the genus Xanthomonas JO - Systematic and Applied Microbiology VL - 31 UR - https://doi.org/10.1016/j.syapm.2008.06.004 DO - 10.1016/j.syapm.2008.06.004 ID - Young2008 ER - TY - JOUR AU - Paradis, E. AU - Claude, J. AU - Strimmer, K. PY - 2004 DA - 2004// TI - APE: analyses of phylogenetics and evolution in R language JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg412 DO - 10.1093/bioinformatics/btg412 ID - Paradis2004 ER - TY - JOUR AU - Potnis, N. AU - Krasileva, K. AU - Chow, V. AU - Almeida, N. F. AU - Patil, P. B. AU - Ryan, R. P. PY - 2011 DA - 2011// TI - Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper JO - BMC genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-146 DO - 10.1186/1471-2164-12-146 ID - Potnis2011 ER - TY - BOOK AU - Ausubel, F. AU - Brent, R. AU - Kingston, R. AU - Moore, D. AU - Seidman, J. AU - Smith, J. PY - 1994 DA - 1994// TI - Current Protocols in Molecular Biology John Wiley & Sons New York NY ID - Ausubel1994 ER - TY - JOUR AU - Alexeyev, M. PY - 1999 DA - 1999// TI - The pKNOCK series of broad-host-range mobilizable suicide vectors for gene knockout and targeted DNA insertion into the chromosome of gram-negative bacteria JO - Biotechniques VL - 26 ID - Alexeyev1999 ER - TY - JOUR AU - Hopkins, C. M. AU - White, F. AU - Choi, S. AU - Guo, A. AU - Leach, J. PY - 1992 DA - 1992// TI - Identification of a family of avirulence genes from Xanthomonas oryzae pv. oryzae JO - Mol Plant-Microbe Interact VL - 5 UR - https://doi.org/10.1094/MPMI-5-451 DO - 10.1094/MPMI-5-451 ID - Hopkins1992 ER - TY - STD TI - Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expressionanalyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;20;43(7):e47. ID - ref60 ER - TY - JOUR AU - Smyth, G. K. PY - 2004 DA - 2004// TI - Linear models and empirical bayes methods for assessing differential expression in microarray experiments JO - Statistical applications in genetics and molecular biology VL - 3 UR - https://doi.org/10.2202/1544-6115.1027 DO - 10.2202/1544-6115.1027 ID - Smyth2004 ER - TY - JOUR AU - Benjamini, Y. AU - Hochberg, Y. PY - 1995 DA - 1995// TI - Controlling the false discovery rate - a practical and powerful approach to multiple testing JO - J Roy Stat Soc B Met VL - 57 ID - Benjamini1995 ER - TY - JOUR AU - Livak, K. J. AU - Schmittgen, T. D. PY - 2001 DA - 2001// TI - Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method JO - Methods VL - 25 UR - https://doi.org/10.1006/meth.2001.1262 DO - 10.1006/meth.2001.1262 ID - Livak2001 ER -