Fig. 2

Schematic illustration of complex processing stages in FRAMA: a inference of CDS using orthologous transcripts from related species; b ortholog-based detection of fusion contigs; c scaffolding; d clipping of transcript 3’ termini by the use of weighted scores for indicative features. Horizontal bars indicate contigs and mRNAs, thicker regions indicate CDS. Colors code the origin of sequence data: Trinity contig (blue), orthologous transcript (green), final FRAMA transcript (red)