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Table 1 Overview of output statistics on camphor tree transcriptome sequencing

From: De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

Parameter IZE IZE_Suc SE_5w
The number of total raw reads 108,397,716 89,960,198 121,310,506
The number of total clean reads 104,771,602 84,950,386 117,117,800
Total base pairs (bp) of clean reads 10.48G 8.5G 11.72G
Q20 percentage 96.19 % 93.21 % 96.25 %
Q30 percentage 89.03 % 82.76 % 89.50 %
N percentage 0.05 % 0.05 % 0.05 %
GC percentage 46.85 % 45.40 % 46.12 %
  1. Q20/30 percentage represents proportion of nucleotides with quality value larger than 20/30, and N percentage represents proportion of unknown nucleotides in clean reads