De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)

Table 1 Overview of output statistics on camphor tree transcriptome sequencing

Parameter	IZE	IZE_Suc	SE_5w
The number of total raw reads	108,397,716	89,960,198	121,310,506
The number of total clean reads	104,771,602	84,950,386	117,117,800
Total base pairs (bp) of clean reads	10.48G	8.5G	11.72G
Q20 percentage	96.19 %	93.21 %	96.25 %
Q30 percentage	89.03 %	82.76 %	89.50 %
N percentage	0.05 %	0.05 %	0.05 %
GC percentage	46.85 %	45.40 %	46.12 %

Q20/30 percentage represents proportion of nucleotides with quality value larger than 20/30, and N percentage represents proportion of unknown nucleotides in clean reads

ISSN: 1471-2164