Table 3 Domain enrichment in proteins under positive selection
From: Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species
SMART/Pfam domain | Description | Fisher’s test |
|---|---|---|
Chromate_transp | Probably act as chromate transporters in bacteria | 0.0000 |
Sulfatase | Present in esterases hydrolysing steroids, carbohydrates and proteins | 0.0020 |
PepSY_TM | Conserved transmembrane helix found in bacterial protein families | 0.0041 |
PrmA | Present in the Ribosomal protein L11 methyltransferase | 0.0123 |
Cons_hypoth95 | Present in 16S RNA methyltransferase D | 0.0166 |
MTS | Present in the 16S RNA methyltransferase C | 0.0182 |
DUF1329 | Putative outer membrane lipoprotein | 0.0215 |
DUF4102 | Putative phage integrase | 0.0235 |
CHASE | Extracellular domain of bacterial transmembrane receptors | 0.0284 |
G3P_acyltransf | Enzymes converting glycerol-3-phosphate into lysophosphatidic acid | 0.0284 |
AceK | Bacterial isocitrate dehydrogenase kinase/phosphatase protein | 0.0284 |
Choline_sulf_C | C-terminus of enzyme producing choline from choline-O-sulfate | 0.0284 |
DUF2165 | Unknown function | 0.0284 |
DUF2909 | Unknown function | 0.0284 |
DUF3079 | Unknown function | 0.0284 |
DUF444 | Unknown function | 0.0284 |
DUF533 | Unknown function; integral membrane protein | 0.0284 |
DUF791 | Unknown function | 0.0284 |
DUF972 | Unknown function | 0.0284 |
Glu_cys_ligase | Enzyme carrying out the first step of glutathione biosynthesis | 0.0284 |
Herpes_UL6 | Present in proteins similar to herpes simplex UL6 virion protein | 0.0284 |
His_kinase | Membrane sensor, a two-component regulatory system | 0.0284 |
Inhibitor_I42 | Protease inhibitor | 0.0284 |
PPDK_N | Present in enzymes catalysing the conversion of pyrophosphate to PEP | 0.0284 |
Sigma54_AID | Activating interacting domain of the Sigma-54 factor | 0.0284 |
Sigma54_CBD | Core binding domains of the Sigma-54 factor | 0.0284 |
Sigma54_DBD | DNA binding domain of the Sigma-54 factor | 0.0284 |
PAS, PAS 4/9 | Present in signalling proteins working as signal sensors | 0.0330 |
MFS | Major Facilitator Superfamily of small molecule transporters | 0.0359 |
Autoind_synth | Autoinducer synthase involved in quorum-sensing response | 0.0423 |
AzIC | Putative protein involved in branched-chain amino acid transport | 0.0423 |
Chitin_bind | Present in carbohydrate-active enzymes (glycoside hydrolases) | 0.0423 |
DUF3299 | Unknown function | 0.0423 |
PTS_EIIC / IIB | Phosphoenolpyruvate-dependent phosphotransferase system | 0.0423 |
TctC | Member of the tripartite tricarboxylate receptors | 0.0423 |
UPF0004 | Domain found in tRNA methythiotransferases | 0.0423 |