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Table 2 In silico predicted sRNA candidates confirmed by strand-specific RNA-seq

From: Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

sRNA candidate sRNA class sRNA type sRNA start sRNA end sRNA length
reg_seq3 3′UTR: polA   28634 28755 122
reg_seq3b IGR spot42 sRNA 28756 28882 127
reg_seq13 3′ UTR: aldA   139913 140154 242
reg_seq27 3′ UTR: ECA0332 TPP riboswitch 380584 380826 243
reg_seq27b 5′ UTR: icc isrH (Hfq binding sRNA) 380825 380917 93
reg_seq31 3′ UTR: ECA0449   515673 515910 238
reg_seq34 3′ UTR: topB STAXI sRNA 601635 601862 228
reg_seq34b antisense: ECA0527 STAXI sRNA 601860 602087 228
reg_seq43 3′ UTR: mdh Glycine riboswitch 758603 758857 255
reg_seq67 IGR   1185902 1186147 246
reg_seq70 antisense: ECA1096   1225748 1226182 435
reg_seq76 5′ UTR: mend TPP riboswitch 1379050 1379349 300
reg_seq109 antisense: osmB TPP/ isrH 2217586 2217946 361
reg_seq129 IGR Trp leader 2602697 2602931 235
reg_seq133 5′ UTR: ansA RtT and TPP 2651356 2651598 243
reg_seq142 3′ UTR: ECA2516   2832294 2832530 237
comp_seq5 3′ UTR: glnL TPP/ isrH 34992 35234 243
comp_seq11 3′ UTR: slmA isrH 164026 164334 309
comp_seq16 5′UTR: ECA0353 TPP 403257 403655 399
comp_seq49 IGR TPP 1218529 1218729 201
comp_seq55 5′ UTR: ECA1196 TPP/ isrH 1358123 1358268 146
comp_seq111 IGR TPP/ isrH 2881355 2881546 192
comp_seq130 3′ UTR: ECA2950 TPP and RtT 3295111 3295347 237
comp_seq204 5′ UTR: sotB   4828158 4828349 192
comp_seq217 5′ UTR: ECA4506   5046219 5046427 209