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Table 3 Functional annotation of the 68 true (and/or known) sRNAs identified by strand-specific RNA-seq

From: Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

sRNA name sRNA type Characterized in this study (RNAspace) Previously characterized (Rfam) Total
RNaseP Ribozyme   1 1
tmRNA    1 1
Cis-regulators     
  Riboswitches    
TPP riboswitch   6 3 9
TPP or isrH   8   8
glycine riboswitch   2 2 4
FMN    1 1
lysine riboswitch   1   1
MOCO_RNA_motif    1 1
yybP-ykoY    1 1
  RNA elements    
alpha_RBS    1 1
cspA    2 2
greA    1 1
his_leader    1 1
JUMPStart    2 2
leucine operon leader    1 1
P26    1 1
rne5    1 1
RtT   1 2 3
trp_leader    1 1
trans-encoded sRNA     
  sRNA    
STAXI    3 3
6S    1 1
crcB    1 1
csrB    1 1
glmY (tke1)    1 1
Rye   1   1
sraC (ryeA)    1 1
STnc240    1 1
StyR-44    5 5
t44    1 1
  Hfq binding sRNA    
frnS    1 1
isrH   2   2
glmZ (sraJ)    1 1
omrA    1 1
rprA    1 1
ryhB    1 1
ryeB (sdsR)    1 1
sgrS    1 1
spot 42    1 1
antisenseRNA (asRNA) asRNA    
HPnc0260    1 1
Total   21 47 68