Table 3 Functional annotation of the 68 true (and/or known) sRNAs identified by strand-specific RNA-seq

RNaseP

Ribozyme

1

1

tmRNA

1

1

Cis-regulators

Riboswitches

TPP riboswitch

6

3

9

TPP or isrH

8

8

glycine riboswitch

2

2

4

FMN

1

1

lysine riboswitch

1

1

MOCO_RNA_motif

1

1

yybP-ykoY

1

1

RNA elements

alpha_RBS

1

1

cspA

2

2

greA

1

1

his_leader

1

1

JUMPStart

2

2

leucine operon leader

1

1

P26

1

1

rne5

1

1

RtT

1

2

3

trp_leader

1

1

trans-encoded sRNA

sRNA

STAXI

3

3

6S

1

1

crcB

1

1

csrB

1

1

glmY (tke1)

1

1

Rye

1

1

sraC (ryeA)

1

1

STnc240

1

1

StyR-44

5

5

t44

1

1

Hfq binding sRNA

frnS

1

1

isrH

2

2

glmZ (sraJ)

1

1

omrA

1

1

rprA

1

1

ryhB

1

1

ryeB (sdsR)

1

1

sgrS

1

1

spot 42

1

1

antisenseRNA (asRNA)

asRNA

HPnc0260

1

1

Total

21

47

68