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Table 1 Fraction of transcripts scored as protein coding

From: Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells

 

Coding

Low expressed coding

snoRNAs

DMDA-PatA

99.86

99.68

0

RR-Score

31.82

13.55

79.01

ORF-Score

78.44

43.45

16.05

Floss-Score

91.69

71.12

11.11

  1. We computed the distribution of DMDA-PatA, RR-, ORF, and Floss scores for ORFs of protein coding RNAs (Coding), low expressed protein coding transcripts (Low Expressed Coding; see Fig. 2 and methods for transcript selection) and snoRNAs. Coding sequences with a coding score better than the 10 % best scoring snoRNAs were classified as coding. Similar, snoRNAs with a better score than the 10 % worst scoring coding RNAs were classified as coding in this table
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BMC Genomics

ISSN: 1471-2164

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