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Table 2 Top SNPs from GEMMA mixed model analysis of Sequenom genotyping data in the discovery cohort

From: Identification and validation of risk loci for osteochondrosis in standardbreds

Chr bp P-value likelihood ratio test Annotation
14 34391965 4.00E-04 Intron ARHGAP26
14 35363931 1.24E-03 Intron FCHSD1
14 16854653 2.23E-03 Synonymous exon 5 CCNG1
14 34803961 2.25E-03 Downstream SPRY4
14 37127327 2.25E-03 Downstream UBE2D2
10 57350466 2.28E-03 Intron PDSS2
14 18034557 5.97E-03 Intron GABRA1
10 55605051 6.27E-03 Downstream PREP
14 18059791 6.96E-03 Intron GABRA1
21 50348105 7.37E-03 Intron SEMA5A
14 16782922 9.55E-03 Synonymous exon 1 MAT2B
21 53443537 9.69E-03 Downstream ADAMTS1
14 18029925 1.13E-02 Synonymous exon 8 GABRA1
2 99999249 1.24E-02 Intergenic
21 48664783 2.20E-02 Intron CTNND2
14 18528304 2.22E-02 Intron GABRB2
10 57303131 2.23E-02 Intron PDSS2
21 50383063 2.58E-02 Intron SEMA5A
16 14358731 2.69E-02 Nonsynonymous exon 8 CNTN6
10 56817838 2.92E-02 Intron QRSL1
21 49882816 3.39E-02 Synonymous exon 1 TAS2R1
1 118771557 3.64E-02 Intron PPCDC
1 118401125 4.42E-02 Downstream SNUPN
  1. Chr chromosome, bp base pair
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