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Table 3 Top SNPs from GEMMA mixed model analysis of Sequenom genotyping data in the validation cohort

From: Identification and validation of risk loci for osteochondrosis in standardbreds

Chr bp P-value likelihood ratio test Annotation
14 18198820 1.41E-03 Nonsynonymous exon 9 GABRA6
3 107352236 1.57E-03 Nonsynonymous exon 20 PROM1
1 140205123 1.89E-03 Nonsynonymous exon 20 ATP8B4
1 139685697 2.82E-03 Nonsynonymous exon 32 TRPM7
14 16830511 5.34E-03 Intron HMMR
14 16840478 8.05E-03 Intron NUDCD2
4 5924012 9.70E-03 Nonsynonymous exon 4 ATXN7L1
21 48664783 1.13E-02 Intron CTNND2
10 57209370 1.83E-02 Downstream PDSS2
5 77536297 1.89E-02 Nonsynonymous exon 8 CLCA2
5 78709303 2.27E-02 Nonsynonymous exon 4 WDR63
1 139944477 4.16E-02 Nonsynonymous exon 10 SLC27A2
10 56817838 4.47E-02 Intron QRSL1
14 37281732 4.93E-02 Downstrream SPATA24
  1. Chr chromosome, bp base pair