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Table 2 miRNAs not previously reported in cassava

From: High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs

Precursor ID

Annotation

Sequence

Loci

Length

Abundance

Stem

Leaf

Callus

Male

Female

(A) Conserved cassava miRNAs

cas-m0858

mes-miR156k

UUGACAGAAGAGAGAGAGCAC

1

21

22383

57

93

8

13033

9192

cas-m1200

mes-miR159a

AGCUGCUGAGCUAUGGAUCCC

1

21

29068

1375

4354

1603

9188

12548

cas-m0832

mes-miR160f

UGCCUGGCUCCCUGAAUGCCA

2

21

883

36

696

40

62

49

cas-m0964

mes-miR166j

UCGGACCAGGCUUCAUUCC

1

19

139123

10643

50196

4910

23213

50161

cas-m0467

mes-miR167b

UGAAGCUGCCAGCAUGAUCU

1

20

2187

21

835

31

621

679

cas-m0739

mes-miR169ac

UAGCCAAGGAUGACUUGCCU

6

20

465

275

147

1

14

28

cas-m1682

mes-miR169ad

UCACAGGCUCUUAUUUUUCAUG

2

22

586

194

391

0

1

0

cas-m1733

mes-miR171a

UUGAGCCGCGUCAAUAUCUCC

1

21

2656

472

375

98

1216

495

cas-m0456

mes-miR171e

UUGAGCCGCGCCAAUAUCACU

2

21

2252

491

76

1593

83

9

cas-m2305

mes-miR171l

CGAGCCGAACCAAUAUCACUC

1

21

1854

133

22

1631

40

28

cas-m2015

mes-miR319f

AUUGGACUGAAGGGAGCUCC

1

20

935

18

2

1

285

629

cas-m0154

mes-miR390b

AAGCUCAGGAGGGAUAGCGCC

3

21

8945

75

60

3892

2519

2399

cas-m0558

mes-miR393a

UCCAAAGGGAUCGCAUUGAUC

2

21

5188

163

255

237

3608

925

cas-m2808

mes-miR397b

UCAUUGAGUGCAGCGUUGAUG

1

21

4455

733

177

3122

210

213

cas-m2480

mes-miR398

UGUGUUCUCAGGUCGCCCCUG

1

21

76630

4157

47642

21171

2646

1014

cas-m0342

mes-miR399h

GGGCACCUCUCGCUUGGCAGG

2

21

395

60

179

1

53

102

cas-m1234

mes-miR477j

ACUCUCCCUAAAGGCUUCAAC

1

21

32998

16992

10477

18

1823

3688

cas-m2132

mes-miR477k

ACUCUCCCUCAAGAGCUUCUC

1

21

1155

392

230

1

213

319

cas-m2133

mes-miR477k

ACUCUCCCUCAAGGGCUUCCGG

1

22

766

177

89

0

216

284

cas-m2631

mes-miR2118

GUUCCCAUGCCACCCAUUUCUA

1

22

1443

4

0

747

311

381

cas-m1386

mes-miR482b

UUCCCAAUGUCGCCCAUUCCGA

1

22

123159

34880

11732

45699

10031

20817

cas-m1250

mes-miR482c

UUUUCCCAAGACCUCCCAUACC

1

22

78356

14942

19227

5369

20157

18661

cas-m1252

mes-miR482d

UUCCCGACACCACCCAUUCCAU

1

22

63034

8837

31874

10068

5962

6293

cas-m1150

mes-miR482e

UCUUACCUACACCGCCCAUGCC

1

22

141313

21276

53388

37559

16820

12270

cas-m1439

mes-miR530b

UGCAUUUGCACCUGCACCUUA

2

21

828

174

98

5

489

62

cas-m1858

mes-miR535c

UUGACGACGAGAGAGAGCACA

1

21

29985

6341

15644

721

4628

2651

cas-m0441

mes-miR535d

UUGACGACGAGAGAGAGCACG

1

21

44468

9657

27521

2842

2686

1762

cas-m0742

mes-miR1446b

UGAACUCUCCCCCUCAACGGCU

2

22

5022

143

249

4491

47

92

cas-m1168

mes-miR3627

UUGUCGCAGGAGCGGUGGCACC

1

22

83898

130

17457

6199

43406

16706

cas-m0627

mes-miR6445

UUCAUUCCUCUUCCUAAAAUGG

2

22

42015

8743

9998

14910

6921

1443

cas-m0849

mes-miR9386

UUUGCAGUUCGAAAGUGGAAGC

4

22

640035

315289

146661

100523

71814

5748

(B) Novel cassava miRNAs

cas-m0099

mes-miR11891

CAUAAAUUGAACUAUAGACC

2

20

386

0

1

0

378

7

cas-m2996

mes-miR11892

UUGUCAUCUCAACCUUGUGUC

1

21

382

111

176

33

42

20