Precursor ID | Annotation | Sequence | Loci | Length | Abundance | Stem | Leaf | Callus | Male | Female |
---|---|---|---|---|---|---|---|---|---|---|
(A) Conserved cassava miRNAs | ||||||||||
cas-m0858 | mes-miR156k | UUGACAGAAGAGAGAGAGCAC | 1 | 21 | 22383 | 57 | 93 | 8 | 13033 | 9192 |
cas-m1200 | mes-miR159a | AGCUGCUGAGCUAUGGAUCCC | 1 | 21 | 29068 | 1375 | 4354 | 1603 | 9188 | 12548 |
cas-m0832 | mes-miR160f | UGCCUGGCUCCCUGAAUGCCA | 2 | 21 | 883 | 36 | 696 | 40 | 62 | 49 |
cas-m0964 | mes-miR166j | UCGGACCAGGCUUCAUUCC | 1 | 19 | 139123 | 10643 | 50196 | 4910 | 23213 | 50161 |
cas-m0467 | mes-miR167b | UGAAGCUGCCAGCAUGAUCU | 1 | 20 | 2187 | 21 | 835 | 31 | 621 | 679 |
cas-m0739 | mes-miR169ac | UAGCCAAGGAUGACUUGCCU | 6 | 20 | 465 | 275 | 147 | 1 | 14 | 28 |
cas-m1682 | mes-miR169ad | UCACAGGCUCUUAUUUUUCAUG | 2 | 22 | 586 | 194 | 391 | 0 | 1 | 0 |
cas-m1733 | mes-miR171a | UUGAGCCGCGUCAAUAUCUCC | 1 | 21 | 2656 | 472 | 375 | 98 | 1216 | 495 |
cas-m0456 | mes-miR171e | UUGAGCCGCGCCAAUAUCACU | 2 | 21 | 2252 | 491 | 76 | 1593 | 83 | 9 |
cas-m2305 | mes-miR171l | CGAGCCGAACCAAUAUCACUC | 1 | 21 | 1854 | 133 | 22 | 1631 | 40 | 28 |
cas-m2015 | mes-miR319f | AUUGGACUGAAGGGAGCUCC | 1 | 20 | 935 | 18 | 2 | 1 | 285 | 629 |
cas-m0154 | mes-miR390b | AAGCUCAGGAGGGAUAGCGCC | 3 | 21 | 8945 | 75 | 60 | 3892 | 2519 | 2399 |
cas-m0558 | mes-miR393a | UCCAAAGGGAUCGCAUUGAUC | 2 | 21 | 5188 | 163 | 255 | 237 | 3608 | 925 |
cas-m2808 | mes-miR397b | UCAUUGAGUGCAGCGUUGAUG | 1 | 21 | 4455 | 733 | 177 | 3122 | 210 | 213 |
cas-m2480 | mes-miR398 | UGUGUUCUCAGGUCGCCCCUG | 1 | 21 | 76630 | 4157 | 47642 | 21171 | 2646 | 1014 |
cas-m0342 | mes-miR399h | GGGCACCUCUCGCUUGGCAGG | 2 | 21 | 395 | 60 | 179 | 1 | 53 | 102 |
cas-m1234 | mes-miR477j | ACUCUCCCUAAAGGCUUCAAC | 1 | 21 | 32998 | 16992 | 10477 | 18 | 1823 | 3688 |
cas-m2132 | mes-miR477k | ACUCUCCCUCAAGAGCUUCUC | 1 | 21 | 1155 | 392 | 230 | 1 | 213 | 319 |
cas-m2133 | mes-miR477k | ACUCUCCCUCAAGGGCUUCCGG | 1 | 22 | 766 | 177 | 89 | 0 | 216 | 284 |
cas-m2631 | mes-miR2118 | GUUCCCAUGCCACCCAUUUCUA | 1 | 22 | 1443 | 4 | 0 | 747 | 311 | 381 |
cas-m1386 | mes-miR482b | UUCCCAAUGUCGCCCAUUCCGA | 1 | 22 | 123159 | 34880 | 11732 | 45699 | 10031 | 20817 |
cas-m1250 | mes-miR482c | UUUUCCCAAGACCUCCCAUACC | 1 | 22 | 78356 | 14942 | 19227 | 5369 | 20157 | 18661 |
cas-m1252 | mes-miR482d | UUCCCGACACCACCCAUUCCAU | 1 | 22 | 63034 | 8837 | 31874 | 10068 | 5962 | 6293 |
cas-m1150 | mes-miR482e | UCUUACCUACACCGCCCAUGCC | 1 | 22 | 141313 | 21276 | 53388 | 37559 | 16820 | 12270 |
cas-m1439 | mes-miR530b | UGCAUUUGCACCUGCACCUUA | 2 | 21 | 828 | 174 | 98 | 5 | 489 | 62 |
cas-m1858 | mes-miR535c | UUGACGACGAGAGAGAGCACA | 1 | 21 | 29985 | 6341 | 15644 | 721 | 4628 | 2651 |
cas-m0441 | mes-miR535d | UUGACGACGAGAGAGAGCACG | 1 | 21 | 44468 | 9657 | 27521 | 2842 | 2686 | 1762 |
cas-m0742 | mes-miR1446b | UGAACUCUCCCCCUCAACGGCU | 2 | 22 | 5022 | 143 | 249 | 4491 | 47 | 92 |
cas-m1168 | mes-miR3627 | UUGUCGCAGGAGCGGUGGCACC | 1 | 22 | 83898 | 130 | 17457 | 6199 | 43406 | 16706 |
cas-m0627 | mes-miR6445 | UUCAUUCCUCUUCCUAAAAUGG | 2 | 22 | 42015 | 8743 | 9998 | 14910 | 6921 | 1443 |
cas-m0849 | mes-miR9386 | UUUGCAGUUCGAAAGUGGAAGC | 4 | 22 | 640035 | 315289 | 146661 | 100523 | 71814 | 5748 |
(B) Novel cassava miRNAs | ||||||||||
cas-m0099 | mes-miR11891 | CAUAAAUUGAACUAUAGACC | 2 | 20 | 386 | 0 | 1 | 0 | 378 | 7 |
cas-m2996 | mes-miR11892 | UUGUCAUCUCAACCUUGUGUC | 1 | 21 | 382 | 111 | 176 | 33 | 42 | 20 |