Table 1 Summary of sequence read alignments to the reference genome
Sample | In vivo derived embryos (mean ± SD) | Serum-free produced embryos (mean ± SD) | Serum-containing produced embryos (mean ± SD) |
|---|---|---|---|
Paired end reads | 14701822.4 ± 1066098.2 × 2 | 12731192.8 ± 615768.7 × 2 | 14670296.3 ± 2890016 × 2 |
Total sequenced fragments | 14701822.4 ± 1066098.2 | 12731192.8 ± 615768.7 | 14670296.3 ± 2890016 |
Total mapped fragments | 7508158 ± 709020.2 | 6636857.8 ± 552752.8 | 7240822.8 ± 2076161.5 |
Uniquely mapped fragments | 7028287.1 ± 662984.5 | 6174226.4 ± 523270.2 | 6691366.4 ± 1939025.2 |
Fragments mapped to annotated genes | 7028287.1 ± 662984.5 | 6174226.4 ± 523270.2 | 6691366.4 ± 1939025.2 |
Fragments mapped to annotated exons | 4353683.6 ± 619988.6 | 4119767.6 ± 760316.3 | 4730978.5 ± 1683623.3 |
Fragments overlapped with annotated introns | 2674603.5 ± 157817.1 | 2054458.8 ± 430089.5 | 1960387.9 ± 465486.1 |