Skip to main content

Table 4 Open reading frame prediction and annotation

From: Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)

Feature Occurrences Annotatedb
Total predicted ORFsa 13,6465  
Non redundant (NR) ORFs 119,361 84,204
Complete NR ORFs 36,493 18,210
5’ Partial NR ORFs 31,905 22,175
3’ Partial NR ORFs 19,209 15,785
Internal partial NR ORFs 31,754 28,034
ORFs taxonomic species hits   300
  1. aORFs predicted by TransDecoder and considered as complete based on the presence of a starting methionine and an ending stop codon. bORFs were annotated by either the NCBI non-redundant (nr), Uniprot, KEGG or Pfam protein databases, with an e-value <1×10−3