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Table 4 Open reading frame prediction and annotation

From: Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)

Feature

Occurrences

Annotatedb

Total predicted ORFsa

13,6465

 

Non redundant (NR) ORFs

119,361

84,204

Complete NR ORFs

36,493

18,210

5’ Partial NR ORFs

31,905

22,175

3’ Partial NR ORFs

19,209

15,785

Internal partial NR ORFs

31,754

28,034

ORFs taxonomic species hits

 

300

  1. aORFs predicted by TransDecoder and considered as complete based on the presence of a starting methionine and an ending stop codon. bORFs were annotated by either the NCBI non-redundant (nr), Uniprot, KEGG or Pfam protein databases, with an e-value <1×10−3
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BMC Genomics

ISSN: 1471-2164

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