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Fig. 3 | BMC Genomics

Fig. 3

From: Comparative genome-wide transcriptome analysis of Vitis vinifera responses to adapted and non-adapted strains of two-spotted spider mite, Tetranyhus urticae

Fig. 3

Gene set enrichment analysis of biological processes for differentially expressed genes (DEG) detected in grapevine responses to feeding of non-adapted London and adapted Murcia spider mite strains. Parametric analysis of gene set enrichment (PAGE) network based on Biological Processes (BP) Gene Ontology (GO) annotation with significantly enriched (a) up- and (b) down-regulated gene sets. Nodes represent gene sets, edges indicate the overlap in genes belonging to connected gene sets. Gene sets: blue – down-regulated, red – up-regulated, gray – not detected as differentially regulated. Size corresponds to number of genes in a given gene set (up-regulated gene sets – 15 to 568, down-regulated – 15 to 112), correspondence between node labels and GO Term/ID is provided in Data S3. The color (gray to red) and width of the edges correspond to an overlap size (up-regulated gene sets – 8 to 351, down-regulated – 8 to 55)

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