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Table 2 A summary of 3516 microarray samples and their chemical treatment conditions

From: Fish connectivity mapping: linking chemical stressors by their mechanisms of action-driven transcriptomic profiles

Zebrafish microarray design, sample size, and chemicals Fathead minnow microarray design, sample size, and chemicals
ZF 21K (Agilent 013223, 15064): USEPA (290) FHM 15K (Agilent 019597,_036574): USEPA (580)
ethniyl estradiol (EE2)a bifenthrin (BIF)a
fadrozol (FAD)a cypermethrin (CYP)a
fipronil (FIP)a permethrin (PER)a
flutamide (FLU)a esfenvalerate (ESF)
ketochonazole (KET)a EE2a
muscimol (MUS)a Terbufos (TER)a
prochloraz (PRO)a  
trenbolone (TRB)a FHM 15K (Agilent 019597): USACE (1711)
trilostane (TRI)a BPA
vinclozolin (VIN)a FADa
  FLUa
ZF 21K (Agilent 013223, 15064): NCBI (154) Gemfibrozil (GEM)a
tert-Butylhydroquinone (TBHQ)a KETa
2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)a KET_TNT_KET
oxygen (O2)a KET_TNT_TNT
2,4-dinitrophenol (DNP) PRO
1,4-dimethoxybenzene (DMB) RDX
azinphos-methyl (APM)a Effluent of Western Lake Superior Sanitary District (WLSSD)
Haloperidol (HAL) TRB a
  TRB_BPA_TRB_BPA
ZF 43K (Agilent 019161): USEPA (24) TRB_BPA_BPA
FLUa TRB_BPA_TRB
PROa TRB_EE2_EE2
  TRB_EE2_TRB
ZF 43K (Agilent 019161): NCBI (270) TRB_EE2_TRB_EE2
benz(a)anthracene (BAA)a TRB_TCC_TCC (triclocarban)
decabromodiphenyl ether (BDE)a TRB_TCC_TRB
bisphenol A (BPA)a TRB_TCC_TRB_TCC
dibenzothiophene (DBT) TRIa
Diazepam (DIA)a VINa
17ß-estradiol (E2)a  
E2 a FHM 15K (Agilent 019597_036574): NCBI (487)
EE2a Diethylstilbestrol (DES)a
FLU Dihydrotestosterone (DHT)
genistein (GEN)a E2a
Linuron (LIN)a Field exposure (EFFLa, EFFHaa; effluent, WWTP San Diego; EFFHba; effluent, WWTP Los Angeles)
methylparaben (MPA)a Field exposure (surface, stream, waste watera)
protein kinase C inhibitor 412 (PKC412)a Field exposure (liver: ElyUSa, ElyEFFa, ElyDSa, HutUS, HutEFFa, HutDSa, RochUSa, RochEFFa, RochDSa))
Propanil (PPL)a Field exposure (ovary: ELYeff, ELYds, HUTeff, HUTds, ROCHds, ROCHeff)
PROa FLU
Pyrene (PYR) Linuron
cyclotrimethylenetrinitramine (RDX)a perflorinated chemicals (PFC)
  Phenanthrene (PHE)a
  Progesterone (PGST)
  Propranolol (PPLL)
  RDX
  1. Zebrafish: ZF 21K (Agilent 013223, 21495 probes unique; Agilent 015064, 21495 probes), ZF 43K (Agilent 019161, 43603 probes unique). Fathead minnow: FHM 15K (Agilent 019597, 15208 unique probes; Agilent 036574, 15208 of 49849 unique probes). Chemicals with at least one experiment condition (different exposure durations either in single or combinations) with DEGs ≥ 4 are marked by “a”, and those shared across platforms or species are highlighted once in bold