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Table 4 Top five significant hits, if any, of selected Cmap queries within microarray platforms

From: Fish connectivity mapping: linking chemical stressors by their mechanisms of action-driven transcriptomic profiles

Signatures

1st match

2nd match

3rd match

4th match

5th match

 

Within ZF 21K (p-value cutoff 1/45 = 0.022)

EE2_30ngL_Ovary_96hr

Self

FAD_Ovary

TRB_F_Brain

EE2_Testis

FAD_M_Brain

EE2_30ngL_M_Brain_48hr

Self

EE2_Testis

FAD_M_Brain

TRB_F_Brain

EE2_Ovary

EE2_30ngL_M_Liver_48hr

Self

TRB_F_Liver

EE2_Testis

O2_Testis

KET_M_Liver

EE2_30ngL_Testis_48hr

Self

EE2_Ovary

EE2_M_Brain

FIP_F_Brain

TRI_TestisLow

FAD_25ugL_F_Brain_48hr

Self

TRB_F_Brain

FAD_M_Brain

FAD_Ovary

EE2_Testis

FAD_25ugL_Ovary_96hr

Self

EE2_Ovary

FAD_M_Brain

TRI_TestisLow

TRB_F_Brain

FIP_5ugL_Testis_48hr

Self

FIP_Ovary

TRI_Testis

FIP_M_Brain

FLU_Testis

FLU_1700ugL_Ovary_48hr

Self

FLU_Testis

PRO_Testis

VIN_Ovary

KET_Ovary

MUS_500ugL_F_Brain_48hr

Self

VIN_Ovary

MUS_M_Brain

KET_M_Brain

VIN_Testis

MUS_500ugL_M_Brain_48hr

Self

MUS_F_Brain

VIN_Ovary

KET_M_Brain

KET_Ovary

O2_1mgL_Testis_4d

Self

O2_Ovary

EE2_M_Liver

O2_Ovary

VIN_Testis

PRO_500ugL_F_Brain_48hr

FLU_Testis

self

PRO_Testis

VIN_Ovary

KET_Ovary

PRO_500ugL_Ovary_48hr

Self

FLU_Ovary

FLU_Testis

KET_Ovary

PRO_Testis

TCDD_2nM_Embryo_6h

Self

TCDD_Embryo

TRI_Ovary

O2_Ovary

PRO_Testis

TRI_2500ugL_Testis_24hr

Self

VIN_Testis

VIN_Ovary

KET_Ovary

TRI_TestisLow

VIN_1000ugL_Ovary_48hr

Self

KET_Ovary

TRI_Testis

VIN_Testis

FIP_Ovary

VIN_1000ugL_Testis_48hr

Self

FLU_Testis

PRO_Testis

TRI_Testis

VIN_Ovary

 

Within ZF 43K (p-value cutoff 1/39 = 0.026)

BPA_0.01ugL_Ovary_96hr

Self

BPA_Ovary

BPA_Ovary

BPA_Ovary

BPA_Embryo

E2_1uM_Embryo_4dpf

self

E2_M_Liver

GEN_Embryo

GEN_Embryo

FLU_Embryo

EE2_0.65mgL_Embryo_48hr

EE2_Embryo

EE2_Embryo

GEN_Embryo

PARAB_Embryo

PYR_Embryo

E2_5ugL_M_Liver_48hrs

self

E2_Embryo

PARAB_Embryo

PARAB_Embryo

GEN_Embryo

GEN_2.4mgL_Embryo_48hr

self

GEN_Embryo

PARAB_Embryo

DBT_Embryo

diazepam_Brain

PKC412_40ugL_fish_6dpf

PKC412_fish

self

RDX_fry

diazepam_Brain

RDX_fry

PRO_500ugL_F_Brain_48hr

PRO_Ovary

linuron_Embryo

FLU_Ovary

PRO_F_Brain

linuron_Embryo

PRO_500ugL_Ovary_48hr

self

FLU_Ovary

linuron_Embryo

PRO_F_Brain

linuron_Embryo

RDX_7.5mgL_fry_96hr

self

RDX_fry

RDX_fry

RDX_fry

RDX_fry

BPA_8mgL_Embryo_48hr

self

BPA_Embryo

EE2_Embryo

BAA_Embryo

PRO_Embryo

diazepam_273ngL_brain_14d

self

diazepam_Brain

PKC412_fish

RDX_fry

RDX_fry

linuron_1.2mgL_Embryo_48hr

self

linuron_Embryo

PKC412_fish

BPA_Embryo

diazepam_Brain

PARAB_19.8mgL_Embryo_48hr

self

PARAB_Embryo

linuron_Embryo

linuron_Embryo

PYR_Embryo

PRO_1.7mgL_Embryo_48hr

self

PRO_Embryo

E2_Embryo

BPA_Embryo

PARAB_Embryo

 

Within FHM 15K (p-value cutoff 1/132 = 0.0076)

BIF_0.15ugL_Larvae_48hr

BIF_Larvae

self

TER_M_Brain

Mixture_M_Brain

KETTNTKET_Ovary

BIF_0.3ugL_Larvae_48hr

self

CYP_Larvae

ESF_Larvae

ESF_Larvae

PER_Larvae

CYP_1ugL_Larvae_48hr

self

VZ_Ovary

PER_Larvae

CYP_larva

RDX_Ovary

DES_1ngL_Liver_96h

EE2_Liver

self

PHE_High_Liver

E2_X_M_Liver

DES_Liver

E2_4ugL_M_Liver_14d

self

E2_M_Liver

EE2_Liver

DES_Liver

ElyEFF_Liver

EE2_25ngL_Liver_72h

E2_M_Liver

self

E2_X_M_Liver

DES_Liver

ElyEFF_Liver

GEM_600ugL_Ovary_8d

self

GEM_Ovary

TrbEE2TrbEE2_Ovary

RochDS_Ovary

TrbEE2TRB_Ovary

PHE_High_Liver_48hr

self

PHE_Med_Liver

ElyEFF_Liver

ElyUS_Liver

PFCs_Low_Liver

TRB_30ngL_Ovary_24h

self

FLU_Ovary

TrbTCCTCC_Ovary

GEM_Ovary

GEM_Ovary

TER_57.5ugL_M_Brain_72h

self

Mixture_M_Brain

PER_M_Brain

BIF_Larvae

KET_Ovary

  1. Only signatures connected to multiple conditions are included. Where similar signatures exist for a condition, only one is listed. ROGL hits are ranked by their adjusted connectivity scores and filtered by a p-value cutoff of 1/(number of sets of ROGLs). Informative connections, defined as a signature and one of its top five ROGL hits sharing the same or similar class of chemicals, are highlighted in bold. Self: a query signature and the connected ROGLs originated from the same experiment