Identification of genes regulated by histone acetylation during root development in Populus trichocarpa

BMC Genomics

Table 1 Statistics of categorization and abundance of DGE tags

Summary		T0	T1	T2.5
Raw Data	Total	4816584	4906668	4805265
Raw Data	Distinct Tag	372060	322043	338137
Clean Tag	Total number	4453843	4620879	4504396
Clean Tag	Distinct Tag number	166167	143103	153507
All Tag Mapping to Gene	Total number	1211139	889173	1180631
	Total % of clean tag	27.19 %	19.24 %	26.21 %
	Distinct Tag number	64057	45678	59848
	Distinct Tag % of clean tag	38.55 %	31.92 %	38.99 %
Unambiguous Tag Mapping to Gene	Total number	1207720	885861	1176439
	Total % of clean tag	27.12 %	19.17 %	26.12 %
	Distinct Tag number	63895	45557	59683
	Distinct Tag % of clean tag	38.45 %	31.84 %	38.88 %
All Tag-mapped Genes	number	20423	17990	19966
All Tag-mapped Genes	% of ref genes	45.35 %	39.95 %	44.34 %
Unambiguous Tag-mapped Genes	number	20376	17947	19907
Unambiguous Tag-mapped Genes	% of ref genes	45.25 %	39.85 %	44.21 %
Mapping to Genome	Total number	2909567	3341569	3038306
	Total % of clean tag	65.33 %	72.31 %	67.45 %
	Distinct Tag number	83956	78922	78929
	Distinct Tag % of clean tag	50.53 %	55.15 %	51.42 %
Unknown Tag	Total number	333137	390137	285459
	Total % of clean tag	7.48 %	8.44 %	6.34 %
	Distinct Tag number	18154	18503	14730
	Distinct Tag % of clean tag	10.93 %	12.93 %	9.60 %

ISSN: 1471-2164