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Table 4 Alleles for each of the parental haplotypes (T1, T2, C1 and C2) of ‘TSH 1188’ and ‘CCN 51’ for each QTL and representative SNP marker associated with WBD

From: Identification of candidate genes involved in Witches’ broom disease resistance in a segregating mapping population of Theobroma cacao L. in Brazil

QTL

SNP marker

TSH 1188

CCN 51

Allele T1

Allele T2

Allele C1

Allele C2

QTL3.1

Tcm003s33466269

G

G

G

T

QTL4.1

Tcm004s00110232

T

C

C

C

QTL6.1

Tcm006s19715703

T

T

T

C

QTL6.2

Tcm006s25375496

G

T

G

G

QTL7.1

Tcm007s10302466

G

G

A

G

QTL9.1

Tcm009s08066239

A

G

A

A

QTL9.2

Tcm009s02031341

A

G

A

A

  1. The alleles marked in bold are segregating in MP01 and are also the favorable alleles associated with WBD resistance