Table 6 Chi-squared test to calculate the associations between the parental haplotype combinations (T1-C1, T1-C2, T2-C1 and T2-C2) and the number of resistant/susceptible trees
QTL 1 | QTL 2 | QTL 3 | Total | Observed | Expected | P-value | % resistant | ||
|---|---|---|---|---|---|---|---|---|---|
Resistant | Suscept. | Resistant | Suscept. | ||||||
QTL9.1_T2-C1 | NA | NA | 110 | 92 | 18 | 55 | 55 | 1.72E-12 | 83.6 |
QTL6.1_T2-C2 | NA | NA | 128 | 101 | 27 | 64 | 64 | 6.12E-11 | 78.9 |
QTL9.1_T2-C2 | NA | NA | 116 | 93 | 23 | 58 | 58 | 8.07E-11 | 80.2 |
QTL7.1_T1-C2 | NA | NA | 111 | 88 | 23 | 55.5 | 55.5 | 6.85E-10 | 79.3 |
QTL9.2_T2-C1 | NA | NA | 117 | 90 | 27 | 58.5 | 58.5 | 5.73E-09 | 76.9 |
QTL9.1_T2-C1 | QTL9.2_T2-C1 | NA | 68 | 59 | 9 | 34 | 34 | 1.33E-09 | 86.8 |
QTL9.1_T2-C2 | QTL6.1_T2-C2 | NA | 37 | 35 | 2 | 18.5 | 18.5 | 5.79E-08 | 94.6 |
QTL9.1_T2-C2 | QTL6.2_T2-C2 | NA | 41 | 37 | 4 | 20.5 | 20.5 | 2.55E-07 | 90.2 |
QTL9.1_T2-C1 | QTL7.1_T1-C1 | NA | 34 | 32 | 2 | 17 | 17 | 2.68E-07 | 94.1 |
QTL9.1_T2-C2 | QTL9.2_T2-C2 | NA | 71 | 57 | 14 | 35.5 | 35.5 | 3.34E-07 | 80.3 |
QTL9.1_T2-C2 | QTL6.1_T2-C2 | QTL6.2_T2-C2 | 20 | 19 | 1 | 10 | 10 | 0.000057 | 95.0 |
QTL9.1_T2-C2 | QTL9.2_T2-C2 | QTL6.1_T2-C2 | 23 | 21 | 2 | 11.5 | 11.5 | 0.000074 | 91.3 |
QTL9.1_T2-C1 | QTL9.2_T2-C1 | QTL3.1_T2-C1 | 18 | 17 | 1 | 9 | 9 | 0.000162 | 94.4 |
QTL9.1_T2-C2 | QTL9.2_T2-C2 | QTL7.1_T1-C2 | 18 | 17 | 1 | 9 | 9 | 0.000162 | 94.4 |
QTL9.1_T2-C2 | QTL9.2_T2-C2 | QTL6.2_T2-C2 | 24 | 21 | 3 | 12 | 12 | 0.000239 | 87.5 |