Table 2 Summary of regions under positive selection processes with FST and θπ values
From: Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing
Chromosome | Start | End | Number of SNPs | θπ (oldest cultivars) | θπ (newest cultivars) | FST |
|---|---|---|---|---|---|---|
07 | 40,100,001 | 40,110,000 | 41 | 0.00219 | 0.00000 | 0.7071 |
40,110,001 | 40,120,000 | 12 | 0.00064 | 0.00000 | 0.7071 | |
40,140,001 | 40,150,000 | 26 | 0.00139 | 0.00000 | 0.7071 | |
40,150,001 | 40,160,000 | 31 | 0.00165 | 0.00013 | 0.7071 | |
40,160,001 | 40,170,000 | 36 | 0.00192 | 0.00006 | 0.7071 | |
40,630,001 | 40,640,000 | 21 | 0.00112 | 0.00000 | 0.7071 | |
15 | 2,950,001 | 2,960,000 | 35 | 0.00187 | 0.00014 | 0.7071 |
2,960,001 | 2,970,000 | 16 | 0.00085 | 0.00000 | 0.7071 | |
17 | 3,010,000 | 3,020,000 | 17 | 0.00060 | 0.00000 | 0.8695 |
3,030,001 | 3,040,000 | 23 | 0.00082 | 0.00000 | 0.8194 | |
3,040,001 | 3,050,000 | 41 | 0.00146 | 0.00002 | 0.8695 | |
3,050,001 | 3,060,000 | 13 | 0.00046 | 0.00000 | 0.7486 | |
5,560,001 | 5,570,000 | 76 | 0.00279 | 0.00000 | 0.8620 | |
5,570,001 | 5,580,000 | 31 | 0.00110 | 0.00000 | 0.8695 | |
5,580,001 | 5,590,000 | 26 | 0.00092 | 0.00000 | 0.8695 | |
5,610,001 | 5,620,000 | 22 | 0.00078 | 0.00000 | 0.8275 | |
5,620,001 | 5,630,000 | 34 | 0.00121 | 0.00000 | 0.8695 | |
5,660,001 | 5,670,000 | 39 | 0.00140 | 0.00000 | 0.8677 | |
5,670,001 | 5,680,000 | 26 | 0.00092 | 0.00000 | 0.8695 | |
5,680,001 | 5,690,000 | 35 | 0.00128 | 0.00000 | 0.8383 | |
5,710,001 | 5,720,000 | 28 | 0.00100 | 0.00003 | 0.8695 | |
5,730,001 | 5,740,000 | 20 | 0.00070 | 0.00000 | 0.8321 | |
5,740,001 | 5,750,000 | 45 | 0.00160 | 0.00004 | 0.8695 | |
5,750,001 | 5,760,000 | 26 | 0.00094 | 0.00000 | 0.8572 | |
5,760,001 | 5,770,000 | 74 | 0.00263 | 0.00000 | 0.8695 | |
5,770,001 | 5,780,000 | 24 | 0.00088 | 0.00001 | 0.8636 | |
5,780,001 | 5,790,000 | 39 | 0.00139 | 0.00000 | 0.8676 | |
5,790,001 | 5,800,000 | 25 | 0.00089 | 0.00000 | 0.8695 | |
5,800,001 | 5,810,000 | 63 | 0.00224 | 0.00000 | 0.8671 | |
5,810,001 | 5,820,000 | 50 | 0.00178 | 0.00000 | 0.8695 | |
5,820,001 | 5,830,000 | 48 | 0.00171 | 0.00000 | 0.8695 | |
5,830,001 | 5,840,000 | 48 | 0.00171 | 0.00003 | 0.8679 | |
5,840,001 | 5,850,000 | 27 | 0.00096 | 0.00000 | 0.8695 | |
5,850,001 | 5,860,000 | 24 | 0.00085 | 0.00007 | 0.8695 | |
5,860,001 | 5,870,000 | 69 | 0.00249 | 0.00010 | 0.8664 | |
5,870,001 | 5,880,000 | 32 | 0.00114 | 0.00000 | 0.8695 | |
5,880,001 | 5,890,000 | 66 | 0.00238 | 0.00000 | 0.8663 | |
5,890,001 | 5,900,000 | 76 | 0.00270 | 0.00003 | 0.8447 | |
5,900,001 | 5,910,000 | 58 | 0.00206 | 0.00000 | 0.8695 | |
5,910,001 | 5,920,000 | 14 | 0.00050 | 0.00007 | 0.8050 | |
18 | 2,190,001 | 2,200,000 | 107 | 0.00571 | 0.00010 | 0.7032 |