edgeR robust DF = 50 | edgeR robust DF = 10 | edgeR robust DF = 4 | edgeR robust \( \mathrm{D}\mathrm{F} = \widehat{DF} \) | edgeR classic \( \mathrm{D}\mathrm{F} = \widehat{DF} \) | DESEQ2 |
---|---|---|---|---|---|
Power - All transcripts | |||||
0.6495 a | 0.6275 b | 0.6215 b | 0.6229 b | 0.5704 c | 0.5418 d |
(0.00610) | (0.00610) | (0.00463) | (0.00463) | (0.00435) | (0.00435) |
Power - Low-count transcripts | |||||
0.3922 a | 0.3692 b | 0.3657 b | 0.3677 b | 0.2647 c | 0.1785 d |
(0.00120) | (0.00120) | (0.00010) | (0.00010) | (0.00008) | (0.00008) |
Precision - All transcripts | |||||
0.3607 a | 0.4393 b | 0.5218 c | 0.5323 c | 0.6321 d | 0.6586 e |
(0.00792) | (0.01153) | (0.01192) | (0.01114) | (0.00589) | (0.00371) |
Precision - Low-count transcripts | |||||
0.1800 a | 0.2289 b | 0.2904 c | 0.2963 c | 0.3605 d | 0.3915 e |
(0.00811) | (0.01305) | (0.01432) | (0.01378) | (0.01363) | (0.01727) |
NPVÂ - All transcripts | |||||
0.9917 a | 0.9915 a | 0.9915 a | 0.9915 a | 0.9902 b | 0.9891 c |
(0.00016) | (0.00016) | (0.00016) | (0.00016) | (0.00016) | (0.00016) |
NPVÂ - Low-count transcripts | |||||
0.9917 a | 0.9915 a | 0.9914 a | 0.9915 a | 0.9902 b | 0.9891 c |
(0.00016) | (0.00016) | (0.00016) | (0.00016) | (0.00016) | (0.00016) |
Accuracy - All transcripts | |||||
0.9718 a | 0.9778 b | 0.9821 b | 0.9826 c | 0.9858 d | 0.9862 e |
(0.00080) | (0.00080) | (0.00024) | (0.00024) | (0.00012) | (0.00014) |
Accuracy - Low-count transcripts | |||||
0.9679 a | 0.9744 b | 0.9794 c | 0.9798 c | 0.9841 d | 0.9855 e |
(0.00122) | (0.00122) | (0.00079) | (0.00079) | (0.00028) | (0.00028) |
FPRÂ - All transcripts | |||||
0.0221 a | 0.0155 b | 0.011 b | 0.0106 c | 0.0063 d | 0.0053 e |
(0.00086) | (0.00086) | (0.00024) | (0.00024) | (0.00001) | (0.00010) |
FPRÂ - Low-count transcripts | |||||
0.0244 a | 0.0175 b | 0.0124 c | 0.0121 c | 0.0063 d | 0.0037 e |
(0.00128) | (0.00128) | (0.00082) | (0.00082) | (0.00019) | (0.00019) |