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Fig. 1 | BMC Genomics

Fig. 1

From: ViromeScan: a new tool for metagenomic viral community profiling

Fig. 1

Workflow of ViromeScan. a Inputs are single-end reads (fastq format) or paired-end reads (fastq or compressed fastq format). b Candidate viral reads are identified by mapping the sequences to the selected reference database. Unmapped reads are not contained in the resulting file. c Three filtering procedures to trim low quality reads and completely remove human and bacterial contaminations are computed. d The remaining viral sequences are assigned to appropriate taxonomy and the results are tabulated as both relative abundance and read counts

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