Table 2 Comparative marker numbers, maps lengths and marker distributions per linkage group between the BP-WGGBS, the BP-Duarte and the consensus Duarte et al. [3] maps
Number of markers | Length (cM) | Number of markers/cM | Number of gaps > 10 cM between two contiguous markers | Number of WGGBS developed SNPs newly mapped | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BP-WGGBS map | BP-Duarte map | Duarte et al. [3] reference consensus map | BP-WGGBS map | BP-Duarte map | Duarte et al. [3] reference consensus map | BP-WGGBS map | BP-Duarte map | Duarte et al. [3] reference consensus map | BP-WGGBS map | BP-Duarte map | Duarte et al. [3] reference consensus map | BP-WGGBS map | |
PsLGI | 6163 | 93 | 235 | 118 | 140 | 147 | 52.2 | 0.7 | 1.6 | 1 | 1 | 0 | 6071 |
PsLGII | 8995 | 102 | 260 | 171 | 173 | 218 | 52.7 | 0.6 | 1.2 | 1 | 1 | 1 | 8898 |
PsLGIII | 12,868 | 162 | 339 | 181 | 189 | 203 | 70.9 | 0.9 | 1.7 | 0 | 0 | 0 | 12,706 |
PsLGIV | 9785 | 133 | 270 | 133 | 146 | 169 | 73.6 | 0.9 | 1.6 | 0 | 0 | 0 | 9652 |
PsLGV | 7634 | 120 | 265 | 139 | 134 | 156 | 55.3 | 0.9 | 1.7 | 0 | 0 | 0 | 7514 |
PsLGVI | 8490 | 116 | 298 | 119 | 111 | 142 | 71.5 | 1 | 2.1 | 0 | 0 | 0 | 8373 |
PsLGVII | 10,328 | 188 | 404 | 166 | 179 | 220 | 62.3 | 1 | 1.8 | 0 | 0 | 0 | 10,139 |
Whole | 64,263 | 914 | 2071 | 1027 | 1073 | 1255 | 62.6 | 0.9 | 1.7 | 2 | 2 | 1 | 63,353 |