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Table 2 Core, variable, and strain specific open reading frames (ORFs)

From: Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications

Organism

ORFs

Core ORFs

Var ORFs

Strain spe. ORFs

Core ORFs (%)

Var ORFs (%)

Strain spe. ORFs (%)

Mycobacterium abscessus ATCC 19977

5477

4160

1317

617

76

24

11.3

Mycobacterium massiliense CIP 108297 T

5247

4135

1112

249

78.8

21.2

4.7

Mycobacterium bolletii CIP 108541 T

5275

4153

1122

520

78.7

21.3

9.9

Mycobacterium massiliense strain M139

5269

4145

1124

435

78.7

21.3

8.3

Mycobacterium abscessus strain 137

5267

4136

1131

459

78.5

21.5

8.7

Mycobacterium massiliense strain 23

5332

4122

1210

481

77.3

22.7

9

  1. ORFs were identified on MAGE plateform, and core genome was defined by Bidirectional Best Blast Hit (BBH) with a 50 % sequence identity threshold, and at least 80 % coverage