Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications

BMC Genomics

Table 3 Nucleotide BLAST results of admixed genomes genomic islands

Strain Query	Genomic island Start position	Genomic island End position	Length (bp)	First nucleotide blast result^a	Total score	Query cover	Max
Mycobacterium massiliense strain M139	1922873	1992300	69427	Mycobacterium intracellulare MOTT-02, complete genome^b	1.12E + 005	99 %	99 %
Mycobacterium massiliense strain M139	4564885	4576047	11162	Mycobacterium sp. JDM601, complete genome ^b	8504	74 %	80 %
Mycobacterium massiliense strain M139	2800023	2810210	10187	Mycobacterium smegmatis JS623, complete genome	3918	77 %	81 %
Mycobacterium massiliense strain M139	254418	263728	9310	Mycobacterium chubuense NBB4, complete genome	1960	38 %	84 %
Mycobacterium massiliense strain 23	870688	892899	22212	Mycobacterium avium 104, complete genome	21406	63 %	99 %
Mycobacterium massiliense strain 23	2385439	2401289	15851	Mycobacterium gilvum Spyr1, complete genome	10443	56 %	89 %
Mycobacterium abscessus strain 137	1922873	1992300	69428	Mycobacterium intracellulare MOTT-02, complete genome^b	1.07E + 005	88 %	99 %
Mycobacterium abscessus strain 137	2172909	2194917	22009	Mycobacterium sp. JLS, complete genome	3410	41 %	98 %
Mycobacterium abscessus strain 137	4564885	4576047	11163	Mycobacterium ulcerans Agy99, complete genome^b	2879	55 %	93 %

^aFirst nucleotide blast result with more than 80 % identity, and covering at least 30 % of the sequence of the tested Genomic Island
^bpathogenic mycobacteria

ISSN: 1471-2164