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Table 1 A summary of major gene ontology groups demonstrating differential gene expression at the 7d, 28d, and 56d time-points of the multi-stressor condition

From: Transcriptome wide analyses reveal a sustained cellular stress response in the gill tissue of Trematomus bernacchii after acclimation to multiple stressors

Gene ontology category Total genes found in the transcriptome 7d differentially expressed 28d differentially expressed 56d differentially expressed
Total Up Down Total Up Down Total Up Down
Carbohydrate metabolic process 480 61 30 31 2 2 0 9 8 1
Cell death 171 32 20 12 3 1 2 4 1 3
Cell proliferation 155 19 4 15 0 0 0 1 1 0
Homeostatic process 194 20 18 2 2 2 0 9 5 4
Immune system process 246 53 39 14 7 7 0 9 5 4
Lipid metabolic process 409 42 20 22 4 4 0 8 6 2
Response to stress 420 62 48 14 3 3 0 12 7 5
  1. The first column includes the total number of genes found within the transcriptome associated with each GO term, followed by the differential expression data for each time-point of the multi-stressor treatments as compared to the control treatment (sub-divided into total, up- and down-regulated) for each of the GO term categories carbohydrate metabolic process, cell death, cell proliferation, homeostatic process, immune system process, lipid metabolic process, and response to stress. The confidence threshold to determine differential expression was a FDR ≤ 0.05