Table 1 eQTL detected for the expression of miRNA
From: Dissecting genetics of cutaneous miRNA in a mouse model of an autoimmune blistering disease
AffyID | PEAK SNP | Chr | Pos(Mb) | CI | -logP score | α | Transcript Location (Chr:Pos) |
|---|---|---|---|---|---|---|---|
miR-322 | rs6386920 | 1 | 54.1 | 51.5–58.4 | 4.797697778 | 0.02 | X:50407432-50407526 |
miR-431 | rs6386920 | 1 | 54.1 | 51.5–59.8 | 5.231417376 | 0.006 | 12:110828657-110828747 |
miR-26a | rs6265423 | 2 | 47 | 28.1–51.3 | 4.376166299 | 0.021 | 10:126432586–126432669,9:118940914-118941003 |
miR-291a-3p | CEL.2_50605053 | 2 | 50.5 | 28.1–59.9 | 4.546953451 | 0.018 | 7:3218920-3219001 |
miR-423-3p | rs6265423 | 2 | 47 | 33.9–51.3 | 4.948513523 | 0.015 | 11:76891566-76891674 |
miR-671-5p | rs13476472 | 2 | 45.5 | 33.9–50.5 | 5.838570402 | 0.004 | 5:24097932-24098029 |
miR-23b | rs6250599 | 2 | 48.5 | 44.3–51.3 | 4.335454904 | 0.022 | 13:63401792-63401865 |
miR-409-5p | rs13476874 | 2 | 159.5 | 136–163 | 4.175101842 | 0.035 | 12:110981368-110981446 |
miR-409-5p | rs13477083 | 3 | 43.3 | 27.5–45.4 | 4.215972522 | 0.033 | 12:110981368-110981446 |
miR-546 | rs13477126 | 3 | 56.4 | 52.9–58.3 | 4.493016911 | 0.029 | 10:126435496-126435616 |
miR-200a-star | rs3671119 | 3 | 126.1 | 117.4–131.3 | 4.688008826 | 0.011 | 4:155429005-155429094 |
miR-339-5p | rs3660863 | 4 | 7.1 | 3.7–19.5 | 4.878132165 | 0.003 | 5:139845604-139845699 |
miR-465c-5p | rs13477873 | 4 | 101.1 | 82.8–118 | 4.472478928 | 0.01 | X:64079130-64079210 |
miR-295 | rs3663950 | 4 | 135.3 | 129.4–141.1 | 4.209508065 | 0.04 | 7:3220774-3220842 |
miR-878-3p | rs13478002 | 4 | 136.2 | 135.3–141.1 | 5.110152979 | 0.01 | X:64054683-64054760 |
miR-742 | rs3673049 | 5 | 90.1 | 87.5–96.6 | 4.765858909 | 0.035 | X:64033548-64033612 |
miR-379 | rs6208251 | 6 | 104.8 | 98.4–116.7 | 4.024954772 | 0.034 | 12:110947270-110947335 |
miR-154 | rs13479063 | 6 | 136.3 | 133.92–142.4 | 4.309450382 | 0.032 | 12:110976643-110976708 |
miR-425* | rs3663988 | 7 | 146.5 | 140.2–146.5 | 4.342220512 | 0.035 | 9:108471108-108471192 |
miR-486 | rs13479880 | 8 | 89.3 | 72.5–95.1 | 4.108040959 | 0.033 | 8:24253027-24253154 |
miR-487b | rs6257357 | 8 | 88 | 77.7–90.2 | 4.81779528 | 0.019 | 12:110965543-110965624 |
miR-501-3p | rs13479880 | 8 | 89.3 | 81.7–95 | 4.205948891 | 0.03 | X:6818369-6818477 |
miR-130b | rs6413270 | 9 | 37.7 | 36.8–44.4 | 4.222559895 | 0.032 | 16:17124154-17124235 |
miR-298 | rs3700596 | 9 | 86.2 | 85–90.6 | 6.573678024 | 0.001 | 2:174093005-174093086 |
miR-466c-3p | rs3712394 | 10 | 17.7 | 14.1–24.2 | 4.569565941 | 0.03 | 2:10403161-10403244 |
miR-466c-3p | rs13480563 | 10 | 27.9 | 24.2–38.7 | 4.591526295 | 0.029 | 2:10403161-10403244 |
miR-126-5p | rs6374078 | 10 | 60.6 | 30.7–65.9 | 4.177297455 | 0.031 | 2:26446877-26446949 |
miR-681 | rs13481076 | 11 | 66.5 | 40.1–71.3 | 4.055742697 | 0.043 | 12:70864822-70864931 |
miR-20a-star | rs3712881 | 11 | 120.9 | 112–121 | 4.160612966 | 0.03 | 14:115443379-115443485 |
miR-203 | mCV22351241 | 12 | 60 | 55.0–72.6 | 3.838027866 | 0.039 | 12:113369091-113369166 |
miR-542-3p | CEL.12_84750094 | 12 | 91.4 | 79.7–103.8 | 4.735149963 | 0.023 | X:50402580-50402664 |
miR-341 | gnf13.079.671 | 13 | 80.5 | 69.5–88.3 | 5.260091403 | 0.008 | 12:110849710-110849805 |
miR-449b | rs13482231 | 14 | 67.6 | 50.9–72.3 | 4.485232377 | 0.019 | 13:113827627-113827706 |
miR-7a | CEL.15_4222769 | 15 | 4.4 | 3.2–9.7 | 4.941341377 | 0.044 | 13:58494140–58494247, 7:86033163-86033259 |
miR-7a | rs13482455 | 15 | 16.7 | 14.8–24.5 | 5.73214998 | 0.022 | 13:58494140–58494247, 7:86033163-86033259 |
miR-337-3p | rs13482549 | 15 | 45.5 | 38.4–53.9 | 4.298224443 | 0.029 | 12:110823999-110824095 |
miR-673-5p | rs13482549 | 15 | 45.5 | 38.9–56.6 | 4.592339382 | 0.014 | 12:110810200-110810290 |
miR-136 | rs13482914 | 17 | 21 | 16.5–27.6 | 4.679083445 | 0.026 | 12:110833537-110833598 |
miR-466b-5p | rs13483212 | 18 | 12.3 | 0–21 | 4.48515896 | 0.016 | 2:10395846-10395927 |
miR-493 | rs6211533 | 19 | 57.1 | 50.2–60.2 | 4.98913787 | 0.004 | 12:110818443-110818525 |
miR-26a | gnfX.023.543 | X | 36.3 | 0–49.3 | 4.718906745 | 0.01 | 10:126432586–126432669, 9:118940914-118941003 |
miR-466e-5p | rs13483712 | X | 9.1 | 0–33.5 | 4.013512497 | 0.05 | 2:10398257-10398340 |