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Table 1 Summary statistics of datasets used in study

From: Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster

Platforms Types Total number of datasets Experimental condition Number of datasets
Public RNA-seq (59 in total) Paired-end without strand-specific 30 Time course/whole body 30
  Paired-end with strand-specific 29 Tissue/head 9
  Tissue/ovary 2
  Tissue/accessory glands 1
  Tissue/testis 1
  Tissue/carcass 4
  Tissue/digestive system 4
  Tissue/CNS 2
  Tissue/fat body 3
  Tissue/imaginal discs 1
  Tissue/salivary glands 2
In-house RNA-seq (2 in total) Paired-end with poly(A)-enriched 1 Tissue/brain 1
  Paired-end with ribo-zero 1 Tissue/brain 1
ChIP-seq (32 in total) H3K36me3 3 Embryos 1
  Larvae 1
  Mixed Adult 1
  H3K4me3 14 Embryos 7
  Larvae 3
  Pupae 1
  Adult Female 1
  Adult Male 1
  Mixed Adult 1
  RNA polymerase II 15 Embryos 8
  Larvae 5
  Pupae 1
  Mixed Adult 1
  1. Detailed information of these datasets can be seen in Additional file 3: Table S2 and Table S5