Table 1 Summary statistics of datasets used in study
Platforms | Types | Total number of datasets | Experimental condition | Number of datasets |
|---|---|---|---|---|
Public RNA-seq (59 in total) | Paired-end without strand-specific | 30 | Time course/whole body | 30 |
| Â | Paired-end with strand-specific | 29 | Tissue/head | 9 |
| Â | Tissue/ovary | 2 | ||
| Â | Tissue/accessory glands | 1 | ||
| Â | Tissue/testis | 1 | ||
| Â | Tissue/carcass | 4 | ||
| Â | Tissue/digestive system | 4 | ||
| Â | Tissue/CNS | 2 | ||
| Â | Tissue/fat body | 3 | ||
| Â | Tissue/imaginal discs | 1 | ||
| Â | Tissue/salivary glands | 2 | ||
In-house RNA-seq (2 in total) | Paired-end with poly(A)-enriched | 1 | Tissue/brain | 1 |
| Â | Paired-end with ribo-zero | 1 | Tissue/brain | 1 |
ChIP-seq (32 in total) | H3K36me3 | 3 | Embryos | 1 |
| Â | Larvae | 1 | ||
| Â | Mixed Adult | 1 | ||
| Â | H3K4me3 | 14 | Embryos | 7 |
| Â | Larvae | 3 | ||
| Â | Pupae | 1 | ||
| Â | Adult Female | 1 | ||
| Â | Adult Male | 1 | ||
| Â | Mixed Adult | 1 | ||
| Â | RNA polymerase II | 15 | Embryos | 8 |
| Â | Larvae | 5 | ||
| Â | Pupae | 1 | ||
| Â | Mixed Adult | 1 |