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Table 2 Summary of 11 genomic regions sequenced

From: GWASeq: targeted re-sequencing follow up to GWAS

SNP Band Region sequenced Total sequenced (bp) Mean coverage % of target with > = 30X Uncorrected p-value (0 PCs) Uncorrected p-value (2 PCs)
rs16892766 8q23.3 8:117,291,701–117,930,819 639,118 69.58 77.25 0.04119 0.03253
rs10505477 8q24 8:127,830,818–128,730,818 900,000 80.17 82.35 0.02315 0.01395
rs719725 9p24 9:5,891,100–6,558,270 667,170 62.40 66.81 0.05862 0.05821
rs10795668 10p14 10:8,376,087–8,772,195 396,108 81.17 81.86 0.002037 0.00187
rs3802842 11q23 11:110,644,790–110,794,790 150,000 85.54 86.64 0.002948 0.002393
rs3802842 11q23 11:111,047,966–111,504,790 456,824 85.54 86.64 - -
rs7136702 12q13.13 12:50,497,179–51,330,290 833,111 64.97 80.70 0.003239 0.006124
rs4444235 14q22.2 14:54,370,768–54,840,250 469,482 73.01 78.49 0.5992 0.746
rs4779584 15q13.3 15:32,958,831–33,432,615 473,784 78.31 82.85 0.08478 0.4264
rs4939827 18q21 18:45,936,002–46,556,002 620,000 92.27 86.52 0.02014 0.008508
rs4925386 20q13.33 20:60,840,110–60,995,164 155,054 74.18 72.77 0.1239 0.0981
   Totals 5,760,651 76.16 79.62   
  1. The first column indicates the focal GWAS SNP that the region was designed around. Sequencing coverage for each region was calculated as the mean coverage across the entire targeted region and as the breadth of coverage. The breadth of coverage is defined as the number of bases per targeted region that are coverage at > = 30X coverage