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Table 4 Composition of the significantly associated SNP sets identified in the SKAT combined analysis

From: GWASeq: targeted re-sequencing follow up to GWAS

GWAS SNP Gene Feature Position rs ID number MAF: Cases (Controls) PLINK p-value p-value for SNP set
rs3802842 C11orf53 3′ UTR 11:111,156,836 rs3087967 0.32(0.27) 1.00 Uncorrected 3.17e–004 (1.79e–004)
  C11orf53 3′ UTR 11:111,156,857 Novel 0(5.55e–004) NA FDR corrected 0.0486 (0.0275)
  C11orf53 3′ UTR 11:111,156,877 Novel 2.51e–004(0)  
  C11orf53 3′ UTR 11:111,156,937 Novel 0(5.55e–004) NA
rs7136702 ATF1 5′ UTR 12:51,157,849 Novel 4.92e–003(7.96e–003) 0.8771 Uncorrected 1.04e–005 (1.83e–005)
  ATF1 5′ UTR 12:51,157,852 Novel 1.04e–003(0) NA
  ATF1 5′ UTR 12:51,157,863 rs61926301 0.58(0.61) 1.00 FDR corrected 0.0032 (0.0056)
  ATF1 5′ UTR 12:51,157,886 Novel 2.55e–004(0) NA
  ATF1 5′ UTR 12:51,157,960 Novel 2.59e–004(0) NA
  ATF1 5′ UTR 12:51,157,996 Novel 2.62e–004(0)  
  ATF1 5′ UTR 12:51,158,010 Novel 2.61e–004(0) NA
  ATF1 5′ UTR 12:51,158,027 Novel 0(5.97e–004) NA
  ATF1 5′ UTR 12:51,158,045 Novel 7.82e–004(0) NA
  ATF1 5′ UTR 12:51,158,047 Novel 2.61e–004(0) NA