Table 5 Composition of the significantly associated SNP sets identified in the SKAT combined analysis
GWAS SNP | Gene | Feature | Position | rs ID number | MAF: Cases (Controls) | PLINK p-value | p-value for SNP set |
|---|---|---|---|---|---|---|---|
rs7136702 | ATF1 | 5′ UTR | 12:51,157,849 | Novel | 4.92e–003(7.96e–003) | 0.8771 | Uncorrected 8.08e–005 (7.59e–005) |
ATF1 | 5′ UTR | 12:51,157,852 | Novel | 1.04e–003(0) | NA | FDR corrected 0.0055 (0.0052) | |
ATF1 | 5′ UTR | 12:51,157,863 | rs61926301 | 0.5.(0.61) | 1.00 | ||
ATF1 | 5′ UTR | 12:51,157,886 | Novel | 2.55e–004(0) | NA | ||
ATF1 | 5′ UTR | 12:51,157,960 | Novel | 2.59e–004(0) | NA | ||
ATF1 | 5′ UTR | 12:51,157,996 | Novel | 2.62e–004(0) | |||
ATF1 | 5′ UTR | 12:51,158,010 | Novel | 2.61e–004(0) | NA | ||
ATF1 | 5′ UTR | 12:51,158,027 | Novel | 0(5.97e–004) | NA | ||
ATF1 | 5′ UTR | 12:51,158,045 | Novel | 7.82e–004(0) | NA | ||
ATF1 | 5′ UTR | 12:51,158,047 | Novel | 2.61e–004(0) | NA |