Table 3 Bioinformatics analysis of variants in moderate LD (r2 > 0.5) with rs2566752
Variant | Relative positiona | LD with rs2566752 (r2) | GERP score | Promoter histone marks | Enhancer histone marks | DNAse | eQTL results |
|---|---|---|---|---|---|---|---|
rs2026749 | −3208 | 0.54 | 1.26 | - | - | - | ND |
rs2566752 | 0 | 1 | −0.317 | - | - | - | ND |
rs36009202 | +112 | 0.57 | 0.697 | - | - | - | ND |
rs75334237 (rs5774922) | +1570 | 0.53 | 0 | - | - | - | ND |
rs2033345 | +2060 | 0.52 | 0.352 | - | - | - | ND |
rs2033344 | +3701 | 0.51 | −2.5 | - | 1 tissue | - | ND |
rs57748040 | +4196 | 0.51 | −3.48 | - | 1 tissue | - | ND |
rs12568456 | +4789 | 0.51 | −5.1 | - | 2 tissues | - | 3 studies |
rs72670452 | +6143 | 0.51 | 3.95 | 5 tissues | 12 tissues | 5 tissues | ND |
rs17130567 | +7150 | 0.51 | 0.805 | 4 tissues | 18 tissues | 12 tissues | 3 studies |
rs1430738 | +7432 | 0.6 | −0.599 | 2 tissues | 17 tissues | - | ND |