Table 3 Properties of scaffolds predicted to form part of either core or dispensable chromosomes in legume-infecting formae speciales
Fom-5190a core | Fom-5190a dispensable | Foc-38-1 core | Foc-38-1 dispensable | Fop-37622 core | Fop-37622 dispensable | |
|---|---|---|---|---|---|---|
Number of scaffold sequences | 446 | 3529 | 413 | 1069 | 116 | 356 |
Total length (bp) | 42,167,838 | 8,766,042 | 41,518,444 | 13,294,565 | 43,587,736 | 11,600,480 |
Average length (bp) | 94,547 | 2484 | 100,529 | 12,436 | 375,756 | 64,988 |
Length gene coding (bp) | 23,149,588 | 2,802,952 | 21,935,481 | 4,117,674 | 23,633,062 | 4,042,338 |
Length repetitive (bp) | 277,400 | 234,489 | 707,976 | 580,264 | 1,354,046 | 3,172,535 |
% Gene coding | 54.90 % | 31.98 % | 52.83 % | 30.97 % | 54.2 % | 34.8 % |
% Repetitive | 0.66 % | 2.67 % | 1.71 % | 4.36 % | 3.1 % | 27.3 % |
Number of predicted genes | 14,427 | 2424 | 12,985 | 3139 | 16,405 | 3218 |
Percentage of genes with Pfam annotaion | 71 % | 48 % | 72 % | 47 % | 66 % | 51 % |
Gene density (per 10 Kb) | 3.4 | 2.8 | 3.1 | 2.4 | 3.7 | 2.7 |
Average protein length (aa) | 479 | 330 | 486 | 361 | 443 | 374 |