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Table 3 Properties of scaffolds predicted to form part of either core or dispensable chromosomes in legume-infecting formae speciales

From: Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

  Fom-5190a core Fom-5190a dispensable Foc-38-1 core Foc-38-1 dispensable Fop-37622 core Fop-37622 dispensable
Number of scaffold sequences 446 3529 413 1069 116 356
Total length (bp) 42,167,838 8,766,042 41,518,444 13,294,565 43,587,736 11,600,480
Average length (bp) 94,547 2484 100,529 12,436 375,756 64,988
Length gene coding (bp) 23,149,588 2,802,952 21,935,481 4,117,674 23,633,062 4,042,338
Length repetitive (bp) 277,400 234,489 707,976 580,264 1,354,046 3,172,535
% Gene coding 54.90 % 31.98 % 52.83 % 30.97 % 54.2 % 34.8 %
% Repetitive 0.66 % 2.67 % 1.71 % 4.36 % 3.1 % 27.3 %
Number of predicted genes 14,427 2424 12,985 3139 16,405 3218
Percentage of genes with Pfam annotaion 71 % 48 % 72 % 47 % 66 % 51 %
Gene density (per 10 Kb) 3.4 2.8 3.1 2.4 3.7 2.7
Average protein length (aa) 479 330 486 361 443 374