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Table 4 Summary of sequence conservation between Fom-5190a and Foc-38-1 predicted dispensable scaffolds and other Fusarium species

From: Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

   Foc-38-1 (Masked)a    Fom-5190a (Masked)a    Fop-37622 (Masked)a  
Total length of predicted dispensable scaffolds (bp)   13,294,565 (12,714,301)    8,766,042 (8,531,553)    11,600,480 (8,427,945)  
  Foc length conserved Foc sequence conserved Foc length conserved maskeda Foc sequence conserved masked Fom length conserved Fom sequence conserved Fom length conserved masked Fom sequence conserved masked Fop length conserved Fop sequence conserved Fop length conserved masked Fop sequence conserved masked
  (bp) (%) (bp) (%) (bp) (%) (bp) (%) (bp) (%) (bp) (%)
Foc-38-1 - - - - 3,504,836 40 3,051,034 34.8 5,820,869 50.2 3,747,704 32.3
Fom-5190a 3,618,892 27.2 3,134,089 23.6 - - - - 5,200,782 44.8 3,852,673 33.2
Fop-37622 5,645,201 42.5 4,105,088 30.9 4,413,435 50.3 3,484,062 39.7 - - - -
F. solani 1,417,711 10.7 1,099,653 8.3 1,215,395 13.9 1,037,655 11.8 1,458,181 12.6 954,748 8.2
F. oxysporum f. sp. lycopersici 4,580,988 34.5 2,041,608 15.4 3,174,649 36.2 1,543,921 17.6 5,107,489 44.0 1,636,670 14.1
F. oxysporum f. sp. melonis 5,635,252 42.4 4,242,674 31.9 4,684,280 53.4 3,907,121 44.6 6,686,394 57.6 3,999,585 34.5
Fo5176 6,429,341 48.4 4,618,139 34.7 5,013,128 57.2 3,930,676 44.8 7,604,002 65.5 4,446,346 38.3
  1. aMasked sequences exclude repetitive regions