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Table 6 SIX gene presence on chromosomes/scaffolds in published Fusarium speciesa

From: Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors

  F. oxysporum f. sp. lycopersici F. oxysprum f. sp. medicaginis Fom-5190a F. oxysporum f. sp. ciceris 38-1 F. oxysporum f. sp. pisi 37622b F. oxysporum f. sp. brassica Fo5176 F. oxysporum f. sp. cubense II5 F. oxysporum f. sp. melonis 26406_1 F. solani (N. haematococca) F. virguliforme Mont-1 F. graminearum 1-4 F. verticillioides F. fujikuroi IMI 58289
six1 14 (2nd half dup. on chr 14) split over 696 and 1167 (partial dup. 241) - 1.281, 1.315 contig00620 1.92, 1.101 1.500 - - - - -
six2 14 - - - - 1.95 - - - - 5 06
six3 14 - - - - - - - - - - -
six4 - - - - contig01435 1.102 - - - - - -
six4b _ - - - contig04359 _ - - - - - -
six5 14 (partial match Chr 5) - 1215 partial match 1.4 - - 1.4 - - - - -
six6 14 - - - - 1.102 1.226 - - - - -
six7 14 - - - - - - - - - - -
six8 2, 3 (3 copies), 6 (2 copies), 7, 14 (2 copies) 420 0138 - contig03501 1.127 - - - - - -
six9 14 270 - 1.43 contig02779 1.86, 1.70 - - - - - -
six10 14 - - - - - - - - - - -
six11 14 - 1126 - - - 1.532 - - - - -
six12 14 - - - - - - - - - - -
six13 6 (2 copies) 306 (split), 3812, 306 1143 1.90 - 1.216 1.222 - - - - -
six14 14 (1st half dup.) - 0905 1.191 - - - - - - 2 -
  1. aID of scaffold or contig showing TBLASTN matches with an Expect (E) value score below 10−5, dup duplicate. b Fop-37622 contained annotated homologs of SIX1 (FOVG_19815, FOVG_19730 and SIX9 (FOVG_17008) and matches by TBLASTN to unannotated versions of SIX13 and SIX14 which were manually annotated for this study (Additional file 23) and SIX5 where the coding sequence was interrupted by stop codons