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Fig. 5 | BMC Genomics

Fig. 5

From: Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions

Fig. 5

Genomic prediction and accuracy evaluation.a BLUP and GEBV for 18,955 unscreened soybean PIs by GAPIT. GAPIT generated a continuous BLUP value for 18,955 soybean PIs, while BLUP for the training population (with determined TRSV sensitivity) were centered at−2.50 (GEBV 1),−1.50 (GEBV 2),−0.50 (GEBV 3), 0.50 (GEBV 4) and 1.50 (GEBV 5). b Comparison of the TRSV sensitivities of the selected 55 soybean accessions that were selected from the predicted 18,955 soybean accessions resulted in correlation between 0.63 and 0.67. The evaluations by GAPIT and rrBLUP had similar results and the inclusion of the most significant SNP, ss715581043, as the covariate reduced the correlation slightly

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