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Fig. 4 | BMC Genomics

Fig. 4

From: Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

Fig. 4

Analysis of C002 sequences identified. a MpC002 is a single copy gene encoded on the negative strand by three exons. The height of the histogram-graph lines represents the relative depth of RNA-seq coverage and therefore where the exon boundaries are. Within the 719 bp exon, variant transcripts, which contain 2–6 repeat motifs, are encoded. b The variant motif region for transcripts from Myzus persicae genotype O. c Reciprocal best blast hit analysis identified orthologues on a 1:1 ratio between the transcriptomes of C002. The C002 cluster was subjected to DN/DS analysis (with the multiple repeat region removed for analysis, this corresponded to the first 120 amino acids) was identified as being under selection pressure (DN/NS = 2.6). The sites most likely to be under selection pressure (P > 0.95) are marked on the alignment by boxes

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